Browse Element(s) Details


OsAffx.30191.1.S1_at

Description tigr:9637.m03286
TID=OsAffx.30191.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3863011/11IBR domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38580Os.7737.1.S1_at11/119+22192244..22196704Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein
LOC_Os09g38610NANA9+22207524..22208021hypothetical protein
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30191.1.S1_at--405--7851Chr09:22220476..22220500 (25 bp)
GGTACCAGCCCAACGGCACGGTGGT
LOC_Os09g38630
OsAffx.30191.1.S1_at--403--3471Chr09:22220411..22220435 (25 bp)
CAGGCCAAGGCGTCCCTGGACAGGT
LOC_Os09g38630
OsAffx.30191.1.S1_at--210--8531Chr09:22220395..22220419 (25 bp)
TGGACAGGTACCTCTACCACTACGA
LOC_Os09g38630
OsAffx.30191.1.S1_at--605--9531Chr09:22220383..22220407 (25 bp)
TCTACCACTACGAGCGGTGGGACGC
LOC_Os09g38630
OsAffx.30191.1.S1_at--293--7731Chr09:22220368..22220392 (25 bp)
GGTGGGACGCCAACCTCAAGTCGCT
LOC_Os09g38630
OsAffx.30191.1.S1_at--339--6231Chr09:22220259..22220283 (25 bp)
GATGGGCTTCGTGACGGAGGCGTAC
LOC_Os09g38630
OsAffx.30191.1.S1_at--1139--4371Chr09:22220119..22220143 (25 bp)
CCAACGCGTCGCTGGAGCGGCTGCA
LOC_Os09g38630
OsAffx.30191.1.S1_at--827--5671Chr09:22220030..22220054 (25 bp)
GACTTCGACAAGTACAGGGCGTACA
LOC_Os09g38630
OsAffx.30191.1.S1_at--1081--9651Chr09:22219987..22220011 (25 bp)
TCACCAGGGTGACGCGGCAATACTT
LOC_Os09g38630
OsAffx.30191.1.S1_at--223--3951Chr09:22219973..22219997 (25 bp)
CGGCAATACTTTGGGAACCTCGTCA
LOC_Os09g38630
OsAffx.30191.1.S1_at--216--5431Chr09:22219959..22219983 (25 bp)
GAACCTCGTCAAAGCGTTCGAGACC
LOC_Os09g38630
Target Sequence 
GGTACCAGCCCAACGGCACGGTGGTGGCGCTGGCCGGCGCCAACGCCGACGACGAGCGGCGGCGGCAGGCCAAGGCGTCC
CTGGACAGGTACCTCTACCACTACGAGCGGTGGGACGCCAACCTCAAGTCGCTGCGCGTGGCGCTCCGCGACATGGAGAG
CCTGGAGCGGTCGGAGCTGGAGGCGATGGCCTCGGCGGCGGGCGTGCCGGCGACGGAGATGGGCTTCGTGACGGAGGCGT
ACGAGCAGGTCGGCGAGGGGCGGCGGGTGCTCGGCTGGGCGCACGCCTACGGCTACTACCTCGACCCGGACCGCGACTTC
ACCAAGCGGCAGCTGTTCGAGTACCTGCAGGAGGACGCCAACGCGTCGCTGGAGCGGCTGCACGGCTGCGCCGAGAGGGA
GAGGAGGGAGCTCTTCGCCGCCGGCGCCGACGACAAGGCCGCCGTCGACTTCGACAAGTACAGGGCGTACAGGGAGAAGC
TCGCCGGGCTCACCAGGGTGACGCGGCAATACTTTGGGAACCTCGTCAAAGCGTTCGAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis