Browse Element(s) Details


OsAffx.30193.1.S1_at

Description tigr:9637.m03297
TID=OsAffx.30193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Z97336 from A. thaliana. This gene is probably cut off.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3872011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30193.1.S1_at--1148--10531Chr09:22257958..22257982 (25 bp)
TTCTTATTGACTTTGGTGTTCCCAA
LOC_Os09g38720
OsAffx.30193.1.S1_at--244--8611Chr09:22257971..22257995 (25 bp)
TGGTGTTCCCAAGCATTATCTCCCT
LOC_Os09g38720
OsAffx.30193.1.S1_at--780--10411Chr09:22257986..22258010 (25 bp)
TTATCTCCCTCGCATCATTAGGAAG
LOC_Os09g38720
OsAffx.30193.1.S1_at--1119--8191Chr09:22258006..22258030 (25 bp)
GGAAGTATCCGGAGCTTTTATTGTT
LOC_Os09g38720
OsAffx.30193.1.S1_at--939--8111Chr09:22258031..22258055 (25 bp)
GGACATAAATCGCACAATGCTCCCC
LOC_Os09g38720
OsAffx.30193.1.S1_at--1112--3011Chr09:22258046..22258136 (25 bp)
AATGCTCCCCAGTTCTTGTGAACAT
LOC_Os09g38720
OsAffx.30193.1.S1_at--219--5235Chr09:22258795..22258819 (25 bp)
GAATCAACTACCTCTTGGATATGGG
LOC_Os09g38720
OsAffx.30193.1.S1_at--175--6433Chr09:22258847..22258871 (25 bp)
GATCTATAGATTCTCTCCACTTCTG
LOC_Os09g38720
OsAffx.30193.1.S1_at--858--9491Chr09:22258858..22258882 (25 bp)
TCTCTCCACTTCTGGGTTACAGTAT
LOC_Os09g38720
OsAffx.30193.1.S1_at--478--2351Chr09:22258994..22259018 (25 bp)
AAAGCCGCGGTTTTGTGTACTTCAG
LOC_Os09g38720
OsAffx.30193.1.S1_at--464--1151Chr09:22259037..22259061 (25 bp)
AGTCTGACAGACATGCTTGCAAAAA
LOC_Os09g38720
Target Sequence 
TTCTTATTGACTTTGGTGTTCCCAAGCATTATCTCCCTCGCATCATTAGGAAGTATCCGGAGCTTTTATTGTTGGACATA
AATCGCACAATGCTCCCCAGTTCTTGTGAACATGTAACTGACTTTAACTCATCTATGTATTCCAATGTTTACAGAATCAA
CTACCTCTTGGATATGGGATTGTCTAAGAAAAATGTGTGCTCGATGATCTATAGATTCTCTCCACTTCTGGGTTACAGTA
TTGAACTTGTTATGAAACCAAAGCTTGAATTTCTGTTAAGAACCATGAAGAAGCCACTTAAAGCTGTTGTAGAATATCCA
AGGTACTTCAGTTATTCACTGGAAGGGAGGATAAAGCCGCGGTTTTGTGTACTTCAGAGTAGAAAGATAGACTGCAGTCT
GACAGACATGCTTGCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis