Browse Element(s) Details


OsAffx.30226.3.S1_at

Description tigr:9631.m04725
TID=OsAffx.30226.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4855011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48490OsAffx.3553.1.S1_x_at11/113+27601413..27608908bHLH family protein, putative, expressed
LOC_Os03g48504NANA3+27609659..27609847NA
LOC_Os03g48520OsAffx.3553.2.A1_at11/113+27611598..27612350PB1 domain containing protein
LOC_Os03g48529NANA3+27612932..27613077NA
LOC_Os03g48540Os.17998.1.S1_at10/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48540Os.5235.1.S1_x_at3/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48550OsAffx.30226.3.S1_at11/113+27623825..27624707hypothetical protein
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30226.3.S1_at--618--971Chr03:27624048..27624072 (25 bp)
AGGAGCGCAAGGAGACTCGTGCCTC
LOC_Os03g48550
OsAffx.30226.3.S1_at--818--2911Chr03:27624040..27624064 (25 bp)
AAGGAGACTCGTGCCTCACAGAGGA
LOC_Os03g48550
OsAffx.30226.3.S1_at--817--9171Chr03:27624029..27624053 (25 bp)
TGCCTCACAGAGGAGTCGCTTCTCT
LOC_Os03g48550
OsAffx.30226.3.S1_at--578--1151Chr03:27624016..27624040 (25 bp)
AGTCGCTTCTCTCTGCTGGGAGACG
LOC_Os03g48550
OsAffx.30226.3.S1_at--504--5751Chr03:27623995..27624019 (25 bp)
GACGGATCCGGCGTGAAAAGAAACG
LOC_Os03g48550
OsAffx.30226.3.S1_at--958--2331Chr03:27623979..27624003 (25 bp)
AAAGAAACGTGAGCTCGACAACGTC
LOC_Os03g48550
OsAffx.30226.3.S1_at--314--2211Chr03:27623962..27623986 (25 bp)
ACAACGTCAGCAAGGCTATTAGCCA
LOC_Os03g48550
OsAffx.30226.3.S1_at--319--911Chr03:27623950..27623974 (25 bp)
AGGCTATTAGCCAAGGATACCCGTT
LOC_Os03g48550
OsAffx.30226.3.S1_at--519--6231Chr03:27623922..27623946 (25 bp)
GATGGCCTTACCGAATGACTGCTTA
LOC_Os03g48550
OsAffx.30226.3.S1_at--681--5271Chr03:27623910..27623934 (25 bp)
GAATGACTGCTTACCGAATGACTGA
LOC_Os03g48550
OsAffx.30226.3.S1_at--926--4091Chr03:27623896..27623920 (25 bp)
CGAATGACTGATGCCAACCGAATGA
LOC_Os03g48550
Target Sequence 
AGGAGCGCAAGGAGACTCGTGCCTCACAGAGGAGTCGCTTCTCTCTGCTGGGAGACGGATCCGGCGTGAAAAGAAACGTG
AGCTCGACAACGTCAGCAAGGCTATTAGCCAAGGATACCCGTTGGGGATGGCCTTACCGAATGACTGCTTACCGAATGAC
TGATGCCAACCGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30226.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis