Browse Element(s) Details


OsAffx.30231.1.S1_at

Description tigr:9638.m00075
TID=OsAffx.30231.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0171011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein
LOC_Os10g01690OsAffx.30232.3.S1_x_at11/1110+440134..441438Transferase family protein
LOC_Os10g01700OsAffx.18075.1.S1_x_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.18075.1.S1_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.3.S1_x_at3/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.1.S1_x_at1/1110+442877..444712expressed protein
LOC_Os10g01710OsAffx.30231.1.S1_at11/1110+445415..445923hypothetical protein
LOC_Os10g01720OsAffx.30232.1.S1_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.1.S1_x_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.3.S1_x_at5/1110+452712..456562Transferase family protein
LOC_Os10g01730OsAffx.18076.1.S1_at11/1110+458063..460201hypothetical protein
LOC_Os10g01740NANA10+461662..462058hypothetical protein
LOC_Os10g01750OsAffx.437.1.S1_x_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01750OsAffx.437.1.S1_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30231.1.S1_at--292--3771Chr10:445452..445476 (25 bp)
CTCTCATCTCTATTGCCGGATCTAG
LOC_Os10g01710
OsAffx.30231.1.S1_at--505--4491Chr10:445466..445490 (25 bp)
GCCGGATCTAGCCATATCTACGATG
LOC_Os10g01710
OsAffx.30231.1.S1_at--3--6431Chr10:445470..445494 (25 bp)
GATCTAGCCATATCTACGATGTTGT
LOC_Os10g01710
OsAffx.30231.1.S1_at--967--9531Chr10:445482..445506 (25 bp)
TCTACGATGTTGTTTCTGCTACTTC
LOC_Os10g01710
OsAffx.30231.1.S1_at--304--9071Chr10:445498..445833 (25 bp)
TGCTACTTCTACCTCAGTTGGGAAA
LOC_Os10g01710
OsAffx.30231.1.S1_at--378--10572Chr10:445504..445839 (25 bp)
TTCTACCTCAGTTGGGAAATCCGGC
LOC_Os10g01710
OsAffx.30231.1.S1_at--339--8152Chr10:445829..445853 (25 bp)
GGAAATCCGGCACCGATGGGTATTT
LOC_Os10g01710
OsAffx.30231.1.S1_at--243--531Chr10:445833..445857 (25 bp)
ATCCGGCACCGATGGGTATTTCCCA
LOC_Os10g01710
OsAffx.30231.1.S1_at--227--5071Chr10:445838..445862 (25 bp)
GCACCGATGGGTATTTCCCAACCGG
LOC_Os10g01710
OsAffx.30231.1.S1_at--1142--3231Chr10:445856..445880 (25 bp)
CAACCGGCACCAATAGTCTTTTCTA
LOC_Os10g01710
OsAffx.30231.1.S1_at--919--8252Chr10:445861..445885 (25 bp)
GGCACCAATAGTCTTTTCTATAGTA
LOC_Os10g01710
Target Sequence 
CTCTCATCTCTATTGCCGGATCTAGCCATATCTACGATGTTGTTTCTGCTACTTCTACCTCAGTTGGGAAATCCGGCACC
GATGGGTATTTCCCAACCGGCACCAATAGTCTTTTCTATAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis