Browse Element(s) Details


OsAffx.30253.1.S1_x_at

Description tigr:9638.m00234
TID=OsAffx.30253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0327011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03230OsAffx.30251.1.S1_at11/1110+1343664..1344464hypothetical protein
LOC_Os10g03240Os.45173.1.S1_x_at6/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240Os.45173.5.S1_x_at4/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240OsAffx.20877.1.S1_at1/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03250Os.7393.1.S1_at1/1110+1356435..1360856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03260OsAffx.30252.1.S1_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30252.1.S1_x_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30257.1.S1_x_at1/1110+1365838..1366663hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_x_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270Os.55138.1.S1_x_at3/1110+1368468..1369723hypothetical protein
LOC_Os10g03280NANA10+1372953..1373334hypothetical protein
LOC_Os10g03290Os.53180.1.S1_at2/1110+1374961..1375977hypothetical protein
LOC_Os10g03290Os.51919.1.S1_at1/1110+1374961..1375977hypothetical protein
LOC_Os10g03300NANA10+1380080..1383629retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g03310Os.46610.1.A1_x_at1/1110+1385440..1387772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03320Os.15852.1.S1_at7/1110+1389876..1391363UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os10g03330OsAffx.10637.1.S1_s_at11/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.3.S1_s_at11/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.4.S1_s_at9/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.2.S1_at1/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30253.1.S1_x_at--794--6611Chr10:1369643..1369667 (25 bp)
GTTGGCCGCGCACGTCACGCCTTTG
LOC_Os10g03270
OsAffx.30253.1.S1_x_at--1034--1891Chr10:1369632..1369656 (25 bp)
ACGTCACGCCTTTGCTCGGCTCAGT
LOC_Os10g03270
OsAffx.30253.1.S1_x_at--994--10711Chr10:1369621..1369645 (25 bp)
TTGCTCGGCTCAGTAGCAAGAGCGA
LOC_Os10g03270
OsAffx.30253.1.S1_x_at--666--7612Chr11:25527389..25527412 (24 bp)
GGGTAATCTTTATGCCTCGGGAGAG
NONE
OsAffx.30253.1.S1_x_at--168--7832Chr11:25527388..25527412 (25 bp)
GGTAATCTTTATGCCTCGGGAGAGT
NONE
OsAffx.30253.1.S1_x_at--910--9752Chr11:25527386..25527410 (25 bp)
TAATCTTTATGCCTCGGGAGAGTGT
NONE
OsAffx.30253.1.S1_x_at--979--9171Chr10:1368546..1368570 (25 bp)
TGCCGGTGATGAATTGGGAGTCATC
LOC_Os10g03270
OsAffx.30253.1.S1_x_at--689--651Chr10:1368538..1368562 (25 bp)
ATGAATTGGGAGTCATCTTGGGAAA
LOC_Os10g03270
OsAffx.30253.1.S1_x_at--555--5191Chr10:1368536..1368560 (25 bp)
GAATTGGGAGTCATCTTGGGAAAAG
LOC_Os10g03270
OsAffx.30253.1.S1_x_at--144--2971Chr10:1368535..1368559 (25 bp)
AATTGGGAGTCATCTTGGGAAAAGA
LOC_Os10g03270
OsAffx.30253.1.S1_x_at--759--2431Chr10:1368516..1368540 (25 bp)
AAAAGATGACGTCCGGATGATCAGG
LOC_Os10g03270
Target Sequence 
GTTGGCCGCGCACGTCACGCCTTTGCTCGGCTCAGTAGCAAGAGCGAGGAAGAAGAATGGGAAAAGAAAAGAAGAGACAG
CAGGGGTAATCTTTATGCCTCGGGAGAGTGTTGCCGGTGATGAATTGGGAGTCATCTTGGGAAAAGATGACGTCCGGATG
ATCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30253.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis