Browse Element(s) Details


OsAffx.30389.2.S1_at

Description gb:NM_187296.1
DB_XREF= gi:34901677
GEN=P0434A03.3
TID=OsAffx.30389.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0434A03.3 (P0434A03.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g295944/11hypothetical protein
LOC_Os02g208203/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29580OsAffx.28660.1.S1_at11/117+17373833..17374216hypothetical protein
LOC_Os07g29580OsAffx.28660.1.S1_x_at11/117+17373833..17374216hypothetical protein
LOC_Os07g29590OsAffx.10637.1.S1_s_at6/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.3.S1_s_at4/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.4.S1_s_at2/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30389.2.S1_at--758--3511Chr07:17393870..17393894 (25 bp)
CATGACGACGAGATGTGGACGGATT
NONE
OsAffx.30389.2.S1_at--607--5951Chr07:17394173..17394197 (25 bp)
GAGCAACCGGAGTAGTCACCATGAT
NONE
OsAffx.30389.2.S1_at--850--4251Chr07:17394179..17394203 (25 bp)
CCGGAGTAGTCACCATGATGCGTCG
NONE
OsAffx.30389.2.S1_at--250--1675Chr07:17394228..17394252 (25 bp)
AGCCCTAGCCCGACGTTCATGGTGT
NONE
OsAffx.30389.2.S1_at--1042--3715Chr07:17394232..17394256 (25 bp)
CTAGCCCGACGTTCATGGTGTTGGC
NONE
OsAffx.30389.2.S1_at--1012--6732Chr09:14729597..14729877 (25 bp)
GTTCATGGTGTTGGCGGCGACCGTG
NONE
OsAffx.30389.2.S1_at--853--5812Chr07:17394278..17394302 (25 bp)
GACCCCTCTCCGATCGACGGAGAAG
NONE
OsAffx.30389.2.S1_at--206--6873Chr07:17394632..17394656 (25 bp)
GTTTGGGAACATCGCATCGGTTGTC
LOC_Os07g29594
OsAffx.30389.2.S1_at--55--7633Chr07:17394636..17394660 (25 bp)
GGGAACATCGCATCGGTTGTCGAGA
LOC_Os07g29594
OsAffx.30389.2.S1_at--1114--2093Chr07:17394640..17394664 (25 bp)
ACATCGCATCGGTTGTCGAGAGGGA
LOC_Os07g29594
OsAffx.30389.2.S1_at--217--4310Chr08:15551139..15551162 (24 bp)
ATCGGTTGTCGAGAGGGACGCCAAA
NONE
Target Sequence 
CATGACGACGAGATGTGGACGGATTGAAGAAGGGCGGCTCCCCCGTGCGCGCAGCCAGGGCGCAGAACTGCACCCCCTGC
ACACAGATACGGTGAGGCACGACGGCAACCGGAGACAGAGGCGGAGGAGGAGCAACCGGAGTAGTCACCATGATGCGTCG
GCGAGGGTGGTGGCGACGGCCACCAGCCCTAGCCCGACGTTCATGGTGTTGGCGGCGACCGTGGTGGTGGTGGCGACCCC
TCTCCGATCGACGGAGAAGATGGCGAAGGCGACGGGCGCGCTGATTGCGAGGGAGGCCGAGAACAGCATCCATAATCCAA
TGAAAGGGGACGCGATGTTTGGGAACATCGCATCGGTTGTCGAGAGGGACGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30389.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis