Browse Element(s) Details


OsAffx.30507.1.S1_at

Description tigr:9638.m01933
TID=OsAffx.30507.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2282011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22770OsAffx.31801.1.S1_at9/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.28844.1.S1_at5/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.31801.4.S1_at1/1110+11504486..11506836hypothetical protein
LOC_Os10g22780OsAffx.30505.1.S1_at7/1110+11509753..11511602hypothetical protein
LOC_Os10g22780OsAffx.8626.1.S1_at2/1110+11509753..11511602hypothetical protein
LOC_Os10g22790NANA10+11514015..11514408hypothetical protein
LOC_Os10g22800NANA10+11516058..11518527retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22810NANA10+11522432..11524070hypothetical protein
LOC_Os10g22820OsAffx.30507.1.S1_at11/1110+11529025..11530397hypothetical protein
LOC_Os10g22820OsAffx.3274.1.S1_at2/1110+11529025..11530397hypothetical protein
LOC_Os10g22830OsAffx.30508.1.S1_at11/1110+11532563..11533984hypothetical protein
LOC_Os10g22840OsAffx.8201.1.S1_at10/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22840OsAffx.8201.1.S1_x_at10/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22840OsAffx.27937.1.S1_at1/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22850NANA10+11545534..11545737hypothetical protein
LOC_Os10g22860Os.35432.2.S1_at11/1110+11548749..11552028Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30507.1.S1_at--284--1371Chr10:11530181..11530205 (25 bp)
AGAGCTTGTTCTGCGTACTTTAGGG
LOC_Os10g22820
OsAffx.30507.1.S1_at--154--6891Chr10:11530195..11530219 (25 bp)
GTACTTTAGGGATCGGTGACATGGT
LOC_Os10g22820
OsAffx.30507.1.S1_at--83--6411Chr10:11530205..11530229 (25 bp)
GATCGGTGACATGGTGCTTTTCCTT
LOC_Os10g22820
OsAffx.30507.1.S1_at--326--811Chr10:11530215..11530239 (25 bp)
ATGGTGCTTTTCCTTGTCCTTGTTG
LOC_Os10g22820
OsAffx.30507.1.S1_at--244--8431Chr10:11530240..11530264 (25 bp)
GGCCTGATCGTGTCGTCGTTCTGAC
LOC_Os10g22820
OsAffx.30507.1.S1_at--121--7211Chr10:11530251..11530275 (25 bp)
GTCGTCGTTCTGACTGACAATGAGC
LOC_Os10g22820
OsAffx.30507.1.S1_at--177--5611Chr10:11530266..11530290 (25 bp)
GACAATGAGCTCAGTACGGTTCACA
LOC_Os10g22820
OsAffx.30507.1.S1_at--543--4831Chr10:11530274..11530298 (25 bp)
GCTCAGTACGGTTCACATGTGGGCT
LOC_Os10g22820
OsAffx.30507.1.S1_at--499--1931Chr10:11530281..11530305 (25 bp)
ACGGTTCACATGTGGGCTGATGACA
LOC_Os10g22820
OsAffx.30507.1.S1_at--193--9451Chr10:11530324..11530348 (25 bp)
TCGGCTTTGGACCTGCTTGGCCTAA
LOC_Os10g22820
OsAffx.30507.1.S1_at--584--5831Chr10:11530333..11530357 (25 bp)
GACCTGCTTGGCCTAATGGCATCAT
LOC_Os10g22820
Target Sequence 
AGAGCTTGTTCTGCGTACTTTAGGGATCGGTGACATGGTGCTTTTCCTTGTCCTTGTTGGGCCTGATCGTGTCGTCGTTC
TGACTGACAATGAGCTCAGTACGGTTCACATGTGGGCTGATGACAGCGGTGGTTCGGACCTCTTCGGCTTTGGACCTGCT
TGGCCTAATGGCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis