Browse Element(s) Details


OsAffx.3053.1.S1_at

Description tigr:9630.m05259
TID=OsAffx.3053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5322010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed
LOC_Os02g53240NANA2+32586273..32586846hypothetical protein
LOC_Os02g53250OsAffx.24845.1.S1_at11/112+32589606..32589956expressed protein
LOC_Os02g53260Os.53232.1.S1_at11/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53260Os.49440.1.S1_x_at4/112+32591624..32594464acetyltransferase, GNAT family protein, expressed
LOC_Os02g53270Os.20428.1.S1_at11/112+32596272..32605201expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3053.1.S1_at--962--8511Chr02:32577658..32577682 (25 bp)
TGGAAGATGCTGTCGCAAGCGGCAC
LOC_Os02g53220
OsAffx.3053.1.S1_at--721--3351Chr02:32577636..32577660 (25 bp)
CACGCCGGATATGCCTTTCGAACAA
LOC_Os02g53220
OsAffx.3053.1.S1_at--380--171Chr02:32577628..32577652 (25 bp)
ATATGCCTTTCGAACAAACAACGGA
LOC_Os02g53220
OsAffx.3053.1.S1_at--166--2471Chr02:32577612..32577636 (25 bp)
AACAACGGAAGCAGGCGCACAGCTA
LOC_Os02g53220
OsAffx.3053.1.S1_at--1055--2711Chr02:32577604..32577628 (25 bp)
AAGCAGGCGCACAGCTAGTCAGCTA
LOC_Os02g53220
OsAffx.3053.1.S1_at--348--1571Chr02:32577592..32577616 (25 bp)
AGCTAGTCAGCTATCTGGTGCACAA
LOC_Os02g53220
OsAffx.3053.1.S1_at--802--10151Chr02:32577581..32577605 (25 bp)
TATCTGGTGCACAACACGTCAATAC
LOC_Os02g53220
OsAffx.3053.1.S1_at--578--5111Chr02:32577576..32577597 (22 bp)
GCACAACACGTCAATACACCCGTTT
LOC_Os02g53220
OsAffx.3053.1.S1_at--539--3091NONE
AATACACCCGTTTCACCTCATTGGG
NONE
OsAffx.3053.1.S1_at--792--11Chr02:32576904..32576928 (25 bp)
ATTGGGTCCCCGTACAATGATGGAG
LOC_Os02g53220
OsAffx.3053.1.S1_at--501--10851Chr02:32576849..32576873 (25 bp)
TTGGCATTGAAGCACTTGATTCGGT
LOC_Os02g53220
Target Sequence 
TGGAAGATGCTGTCGCAAGCGGCACGCCGGATATGCCTTTCGAACAAACAACGGAAGCAGGCGCACAGCTAGTCAGCTAT
CTGGTGCACAACACGTCAATACACCCGTTTCACCTCATTGGGTCCCCGTACAATGATGGAGGGGATGTGTCTTATGGATG
GGATGGTGAGGTTGGCATTGAAGCACTTGATTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis