Browse Element(s) Details


OsAffx.30530.1.S1_at

Description tigr:9638.m02175
TID=OsAffx.30530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2567011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed
LOC_Os10g25690OsAffx.6764.1.S1_at11/1110+12973972..12976326hypothetical protein
LOC_Os10g25690Os.51366.1.S1_at2/1110+12973972..12976326hypothetical protein
LOC_Os10g25690OsAffx.31141.1.A1_at1/1110+12973972..12976326hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30530.1.S1_at--1055--1451Chr10:12956477..12956501 (25 bp)
AGAAGATCGGTCTCAGCTATACTGA
LOC_Os10g25670
OsAffx.30530.1.S1_at--1052--9651Chr10:12956489..12956513 (25 bp)
TCAGCTATACTGAGGTAGCCACAAT
LOC_Os10g25670
OsAffx.30530.1.S1_at--785--1691Chr10:12956505..12956529 (25 bp)
AGCCACAATGTGGATGCAGCTGAGT
LOC_Os10g25670
OsAffx.30530.1.S1_at--445--6331Chr10:12956517..12956541 (25 bp)
GATGCAGCTGAGTGGTCCTCGCCGC
LOC_Os10g25670
OsAffx.30530.1.S1_at--23--6191Chr10:12956564..12957032 (25 bp)
GATGGGGAAGACCTAACACCGACCT
LOC_Os10g25670
OsAffx.30530.1.S1_at--983--2151Chr10:12957023..12957047 (25 bp)
ACACCGACCTTTTCTTGACTCCAGG
LOC_Os10g25670
OsAffx.30530.1.S1_at--113--5851Chr10:12957028..12957052 (25 bp)
GACCTTTTCTTGACTCCAGGCATTG
LOC_Os10g25670
OsAffx.30530.1.S1_at--1003--10551Chr10:12957034..12957058 (25 bp)
TTCTTGACTCCAGGCATTGGTGCGA
LOC_Os10g25670
OsAffx.30530.1.S1_at--1019--5711Chr10:12957039..12957063 (25 bp)
GACTCCAGGCATTGGTGCGAGACGC
LOC_Os10g25670
OsAffx.30530.1.S1_at--857--4931Chr10:12957047..12957071 (25 bp)
GCATTGGTGCGAGACGCCGCCACTA
LOC_Os10g25670
OsAffx.30530.1.S1_at--597--4171Chr10:12957064..12957088 (25 bp)
CGCCACTACCGAGCGGGTGTAGGTA
LOC_Os10g25670
Target Sequence 
AGAAGATCGGTCTCAGCTATACTGAGGTAGCCACAATGTGGATGCAGCTGAGTGGTCCTCGCCGCCTACCACATTTGGCT
CAGGGGAGATGGGGAAGACCTAACACCGACCTTTTCTTGACTCCAGGCATTGGTGCGAGACGCCGCCACTACCGAGCGGG
TGTAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis