Browse Element(s) Details


OsAffx.30548.1.S1_at

Description tigr:9638.m02278
TID=OsAffx.30548.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2667011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26640OsAffx.30547.1.S1_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26640Os.39123.2.S1_s_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein
LOC_Os10g26680Os.11818.1.S1_at11/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26680Os.39588.1.A1_x_at2/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26690Os.46494.1.S1_at11/1110+13606147..13608140ribosomal protein L32 containing protein, expressed
LOC_Os10g26700Os.9009.1.S1_x_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26700Os.9009.1.S1_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26710OsAffx.6776.1.S1_at11/1110+13610669..13611054hypothetical protein
LOC_Os10g26720Os.51603.1.S1_at1/1110+13614800..13620101exonuclease family protein, expressed
LOC_Os10g26730Os.11312.1.S1_s_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26730Os.11312.1.S1_at11/1110+13623053..13626656exonuclease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30548.1.S1_at--927--8591Chr10:13597609..13597633 (25 bp)
TGGTCTCCCGCCAAATTTGAATAGT
LOC_Os10g26670
OsAffx.30548.1.S1_at--525--10271Chr10:13597624..13597648 (25 bp)
TTTGAATAGTATTGGCGCGGCGAGA
LOC_Os10g26670
OsAffx.30548.1.S1_at--629--3931Chr10:13597680..13597704 (25 bp)
CGGCGACGTCGGAGTATTCGAGCTC
LOC_Os10g26670
OsAffx.30548.1.S1_at--984--6071Chr10:13597691..13597715 (25 bp)
GAGTATTCGAGCTCGAGTTTCCGGA
LOC_Os10g26670
OsAffx.30548.1.S1_at--655--6071Chr10:13597705..13597729 (25 bp)
GAGTTTCCGGAGCAACTTCACTCTC
LOC_Os10g26670
OsAffx.30548.1.S1_at--707--7771Chr10:13597738..13597762 (25 bp)
GGTGAAGGTCACCATACCGGCGTCC
LOC_Os10g26670
OsAffx.30548.1.S1_at--665--5831Chr10:13597808..13597832 (25 bp)
GACCTGTTCGAGATCAAGAGCCTGA
LOC_Os10g26670
OsAffx.30548.1.S1_at--882--2771Chr10:13597823..13597847 (25 bp)
AAGAGCCTGATGATCGACGACTGCC
LOC_Os10g26670
OsAffx.30548.1.S1_at--556--1871Chr10:13597854..13597878 (25 bp)
ACGAGCCCAGCGAGGCGAGCGTCCA
LOC_Os10g26670
OsAffx.30548.1.S1_at--216--4091Chr10:13597869..13597893 (25 bp)
CGAGCGTCCAATGGAGCGTGGTCAC
LOC_Os10g26670
OsAffx.30548.1.S1_at--271--6351Chr10:13598034..13598058 (25 bp)
GATGCGTCAGCCACAGGGCCGTCGA
LOC_Os10g26670
Target Sequence 
TGGTCTCCCGCCAAATTTGAATAGTATTGGCGCGGCGAGAGTGGCGGCCATTGGGAGGGAGGAGGGCACGGCGGCGACGT
CGGAGTATTCGAGCTCGAGTTTCCGGAGCAACTTCACTCTCCTCGCTCCGGTGAAGGTCACCATACCGGCGTCCGGCGGC
GACGACGACGACGACGACGTCGGGAGCGAGTCGAGCTCCGACCTGTTCGAGATCAAGAGCCTGATGATCGACGACTGCCG
GGGCTACGAGCCCAGCGAGGCGAGCGTCCAATGGAGCGTGGTCACGGCGAGCGCCGCCGACGTGTCCGTCGCCGCGTCGG
GGCGCGGCGGCGGCGGCGGCGGCAAGGGGAGGCCGGCGGCGGCGGTGGCCGTGAGGCAGCAGCAGCACCGGCGGCAGGCA
GACCGGCCGGTCGGGCTGCTGGCGGGATGCGTCAGCCACAGGGCCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis