Browse Element(s) Details


OsAffx.30564.1.S1_s_at

Description gb:NM_196500.1
DB_XREF= gi:37534359
TID=OsAffx.30564.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0061K21.6), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1104011/11hypothetical protein
LOC_Os03g3717011/11hypothetical protein
LOC_Os10g037706/11hypothetical protein
LOC_Os10g281102/11hypothetical protein
LOC_Os12g154302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11000Os.11947.1.S1_a_at10/1111+6063705..6069244ABC1 family protein, expressed
LOC_Os11g11010OsAffx.30923.1.S1_at10/1111+6070865..6072074hypothetical protein
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein
LOC_Os11g11030OsAffx.18793.1.S1_at11/1111+6087707..6088042hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.3.S1_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_x_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11050Os.12719.2.S1_at11/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.12719.1.S1_at10/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.26865.1.S1_at1/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11060Os.53099.1.S1_at11/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11060Os.38770.1.S1_at3/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30564.1.S1_s_at--1117--9174Chr11:6089295..6089319 (25 bp)
TGCCGTTGGCGAACGGCGATTCTTC
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--1--8254Chr11:6089301..6089325 (25 bp)
TGGCGAACGGCGATTCTTCGGCCGA
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--102--6575Chr11:6089312..6089336 (25 bp)
GATTCTTCGGCCGACACAACCACAA
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--273--5594Chr11:6089340..6089364 (25 bp)
GAAATGCTGAGGACTTCCTTGCGAT
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--322--6194Chr11:6089348..6089372 (25 bp)
GAGGACTTCCTTGCGATCCTGTTGA
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--796--2055Chr11:6089352..6089376 (25 bp)
ACTTCCTTGCGATCCTGTTGAAGGT
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--405--3635Chr11:6089357..6089381 (25 bp)
CTTGCGATCCTGTTGAAGGTGGTCT
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--161--8436Chr11:6089395..6089419 (25 bp)
GGCCGGAATCGATGCCAGTGGTGTC
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--746--6236Chr11:6089847..6089871 (25 bp)
GATGGCTTGGCTTGAGATGGACCAT
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--710--4936Chr11:6089851..6089875 (25 bp)
GCTTGGCTTGAGATGGACCATGTCG
LOC_Os11g11040
OsAffx.30564.1.S1_s_at--215--215Chr11:6089991..6090015 (25 bp)
ATTTGCTCGGCATGATGTGGGAAGT
LOC_Os11g11040
Target Sequence 
TGCCGTTGGCGAACGGCGATTCTTCGGCCGACACAACCACAAGAAGAAATGCTGAGGACTTCCTTGCGATCCTGTTGAAG
GTGGTCTCGTCGCCGGAGGTGGCCGGAATCGATGCCAGTGGTGTCNCGAGCGGNGGTGGTNNNNNNNNNNNNNNNGCTCA
CTGGAACTTGATTGCGGCATGGCGAGGTCTGGGTAANAGCGGCAATGGAAAAGACAGCCCNGCGGTGGTGGATAACGTCG
GCTTCACGGCGACGGCTCGCTTGAGCGGTGGAATGCTTAGAGAAGGCGATGACTTTGGCNCGATGGCTTGGCTTGAGATG
GACCATGTCGGTNGGAACAGCGACGACNTCATGGCGGCGNCGCCTGGTGCGAGTTCCGGAGCTCTCGTGGGCAAGGTCGC
NTTTCCGTTGCTGCAGTGGATAAAACGAGATGGGGTCAAAANGAGATTTGCTCGGCATGATGTGGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30564.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis