Browse Element(s) Details


OsAffx.30564.2.S1_x_at

Description tigr:9638.m00284
TID=OsAffx.30564.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0377010/11hypothetical protein
LOC_Os03g371705/11hypothetical protein
LOC_Os11g110404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03730Os.46555.1.S1_x_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46555.1.S1_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.2.S1_x_at5/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.1.S1_at1/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.4.S1_x_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.1.S1_at11/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03740Os.46561.2.S1_at3/1110+1672479..1675372F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.2.S1_x_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46058.1.S1_at11/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03750Os.46555.1.S1_x_at2/1110+1679068..1681989F-box domain containing protein, expressed
LOC_Os10g03760Os.46871.1.S1_at10/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.46058.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03760Os.8362.2.S1_x_at1/1110+1684480..1687105F-box domain containing protein, expressed
LOC_Os10g03770OsAffx.30564.2.S1_s_at11/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.2.S1_x_at10/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_s_at6/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.1.S1_at3/1110+1688087..1688907hypothetical protein
LOC_Os10g03770OsAffx.30564.3.S1_at1/1110+1688087..1688907hypothetical protein
LOC_Os10g03780Os.46561.3.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.2.S1_at11/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.46561.4.S1_x_at4/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780OsAffx.30264.1.S1_at2/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03780Os.8362.2.S1_x_at1/1110+1691966..1699100F-box domain containing protein, expressed
LOC_Os10g03790OsAffx.20771.1.S1_x_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03790OsAffx.20771.1.S1_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_x_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03809NANA10+1706335..1706961NA
LOC_Os10g03820OsAffx.18116.1.S1_at11/1110+1710568..1711389hypothetical protein
LOC_Os10g03830Os.27532.1.S1_a_at11/1110+1713491..1724273expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30564.2.S1_x_at--274--5591Chr10:1688133..1688157 (25 bp)
GAAATGCTGAGAACTTCCTTGCGAT
LOC_Os10g03770
OsAffx.30564.2.S1_x_at--87--2515Chr11:6089352..6089375 (24 bp)
AACTTCCTTGCGATCCTGTTGAAGG
LOC_Os11g11040
OsAffx.30564.2.S1_x_at--595--8811Chr10:1688160..1688184 (25 bp)
TGTTGAAGGTGGTCTCATCGCCGGA
LOC_Os10g03770
OsAffx.30564.2.S1_x_at--567--3055Chr11:6089401..6089423 (23 bp)
AATCGATGCCAGTGGTGTCGCGAAT
LOC_Os11g11040
OsAffx.30564.2.S1_x_at--630--7491Chr10:1688223..1688366 (25 bp)
GTGGTCTTCGCAGCAATGGAAAAGA
LOC_Os10g03770
OsAffx.30564.2.S1_x_at--599--5174Chr11:6089564..6089588 (25 bp)
GCAATGGAAAAGACAGCCCGGCGGT
LOC_Os11g11040
OsAffx.30564.2.S1_x_at--369--3976Chr11:6089585..6089609 (25 bp)
CGGTGGTGGATAACGTCGGCTTCAC
LOC_Os11g11040
OsAffx.30564.2.S1_x_at--23--8635Chr10:14271446..14271470 (25 bp)
TGGTGGATAACGTCGGCTTCACGGC
NONE
OsAffx.30564.2.S1_x_at--497--5311NONE
GAAGGTGCATGGATGTGGATAAAAC
NONE
OsAffx.30564.2.S1_x_at--687--7331Chr10:1688438..1688765 (25 bp)
GTGCATGGATGTGGATAAAACGAGA
LOC_Os10g03770
OsAffx.30564.2.S1_x_at--307--6032Chr10:1688825..1688849 (25 bp)
GAGATGGAGACGACTCGTCGGCAAC
LOC_Os10g03770
Target Sequence 
GAAATGCTGAGAACTTCCTTGCGATCCTGTTGAAGGTGGTCTCATCGCCGGAGGTGGCCGGAATCGATGCCAGTGGTGTC
GCGAATGGCGGTGGTCTTCGCAGCAATGGAAAAGACAGCCCGGCGGTGGTGGATAACGTCGGCTTCACGGCGACGGCTCG
CTTGGGTGGTGGAATGCTTAGAGAAGGTGCATGGATGTGGATAAAACGAGATGGGGTCAAAAGGAGATTTGCTCGGCATG
ATGTGGGAAGTATGGAACGGGAAAGATTTGGAGATGGAGACGACTCGTCGGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30564.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis