Browse Element(s) Details


OsAffx.3060.1.S1_at

Description tigr:9630.m05349
TID=OsAffx.3060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5402011/11ATP-dependent DNA helicase, RecQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53990Os.50421.1.S1_at11/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g53990Os.4183.1.S1_a_at2/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g54000Os.10219.1.S1_at11/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54000Os.50124.1.S1_at1/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54010Os.14769.1.S1_at11/112+33072442..33077687lipase class 3 family protein, putative, expressed
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006974biological_processresponse to DNA damage stimulus
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3060.1.S1_at--67--2851Chr02:33084491..33084515 (25 bp)
AAGTCAGAGTTATCGTCCTCTTCAA
LOC_Os02g54020
OsAffx.3060.1.S1_at--462--2951Chr02:33084453..33084476 (24 bp)
AAGGCCTTAGCCGACTTTAGTCAGA
LOC_Os02g54020
OsAffx.3060.1.S1_at--717--9131Chr02:33084325..33084349 (25 bp)
TGCGAAAATTCTACCTGCCGACGAA
LOC_Os02g54020
OsAffx.3060.1.S1_at--201--7031Chr02:33083951..33083975 (25 bp)
GTACAACCAACTTTATGCCAACGCT
LOC_Os02g54020
OsAffx.3060.1.S1_at--935--4391Chr02:33083935..33083959 (25 bp)
GCCAACGCTCATGTGATGCTTGCAA
LOC_Os02g54020
OsAffx.3060.1.S1_at--639--6311Chr02:33083921..33083945 (25 bp)
GATGCTTGCAAACACCCAAATCTAG
LOC_Os02g54020
OsAffx.3060.1.S1_at--225--2271Chr02:33083904..33083928 (25 bp)
AAATCTAGTGTCCTCACGTTTGGAG
LOC_Os02g54020
OsAffx.3060.1.S1_at--376--10851Chr02:33083885..33083909 (25 bp)
TTGGAGGAACTTCGTCGTGTGCCCA
LOC_Os02g54020
OsAffx.3060.1.S1_at--846--4531Chr02:33083865..33083889 (25 bp)
GCCCACCTGTCGCTATAACAAGATA
LOC_Os02g54020
OsAffx.3060.1.S1_at--750--3091Chr02:33083301..33083325 (25 bp)
AATACTGCCATTTCAAAGCTCCCAT
LOC_Os02g54020
OsAffx.3060.1.S1_at--1028--1631Chr02:33082988..33083012 (25 bp)
AGCGATTGTTGAATGGCCTTGGACA
LOC_Os02g54020
Target Sequence 
AAGTCAGAGTTATCGTCCTCTTCAACTGAACTTTCAGAGAAGGCCTTAGCCGACTTTAGTCAGATAATTGATTACTGCGA
AAATTCTACCTGCCGACGAAAAATGATCATTGAGAGCTTTGGGGAGAAGGTACAACCAACTTTATGCCAACGCTCATGTG
ATGCTTGCAAACACCCAAATCTAGTGTCCTCACGTTTGGAGGAACTTCGTCGTGTGCCCACCTGTCGCTATAACAAGATA
TCCCCAGTCTTCAAAAGCTCGTTGGCTAATCCAAAACACATGGAGACAGAATTTTGGAATCGTGAAGATGATGCAAGCAT
ATCAGTTGAAGATATATCTGATTCCGATGATGGGAAGGAGGTGGTGAGCAATACTGCCATTTCAAAGCTCCCATCAAAAG
CAGGGCTAGATGCAAAATTTGAAGCATTGGAGCGTGCTGAAAATGCTTATTATCAAGCTAAAGGTCAGACCAAGCAGCAG
GGTGGGAAGCTTGTTGACAAGAAGAGCATATCTCAGACACTAAGAGATGCAAGCCAAAAGCGATTGTTGAATGGCCTTGG
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis