Browse Element(s) Details


OsAffx.30627.1.S1_at

Description tigr:9638.m02730
TID=OsAffx.30627.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3157011/11expressed protein
LOC_Os11g349501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os10g31530Os.18711.1.S1_at11/1110+16186452..16187321expressed protein
LOC_Os10g31540OsAffx.18476.1.S1_at11/1110+16189643..16190224expressed protein
LOC_Os10g31550OsAffx.18477.1.S1_at11/1110+16193108..16193527hypothetical protein
LOC_Os10g31550Os.53910.1.S1_at1/1110+16193108..16193527hypothetical protein
LOC_Os10g31560Os.46670.1.S1_at11/1110+16201593..16202162expressed protein
LOC_Os10g31570OsAffx.30627.1.S1_at11/1110+16208344..16208952expressed protein
LOC_Os10g31580NANA10+16215141..16216544retrotransposon protein, putative, unclassified
LOC_Os10g31590NANA10+16222075..16228185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31600OsAffx.21897.5.S1_x_at4/1110+16228502..16231423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31610OsAffx.26607.1.S1_at9/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.31510.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.24206.1.S1_at1/1110+16233306..16237009hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30627.1.S1_at--1147--8511Chr10:16208397..16208421 (25 bp)
TGGACTATCCCATGCTGCAAGAGTA
LOC_Os10g31570
OsAffx.30627.1.S1_at--1074--7711Chr10:16208505..16208529 (25 bp)
GGGTGGCTTTGGTGCTAGCAACACT
LOC_Os10g31570
OsAffx.30627.1.S1_at--130--9031Chr10:16208517..16208541 (25 bp)
TGCTAGCAACACTAGTAGTTCCGGG
LOC_Os10g31570
OsAffx.30627.1.S1_at--812--10391Chr10:16208547..16208571 (25 bp)
TTTTGGGACAAGTAATGCACATGCT
LOC_Os10g31570
OsAffx.30627.1.S1_at--98--3012Chr10:16208560..16208584 (25 bp)
AATGCACATGCTAATGCTGGAGGTG
LOC_Os10g31570
OsAffx.30627.1.S1_at--1045--3571Chr10:16208609..16208633 (25 bp)
CATTAGGAAGTGTTGGGTCTGGTTC
LOC_Os10g31570
OsAffx.30627.1.S1_at--642--6711Chr10:16208642..16208666 (25 bp)
GTTCTGGCTCTAGCTCAAGTAACAG
LOC_Os10g31570
OsAffx.30627.1.S1_at--851--271Chr10:16208742..16208766 (25 bp)
ATATGGCGGTGGTTACTCAGGGTCC
LOC_Os10g31570
OsAffx.30627.1.S1_at--389--3751Chr10:16208757..16208781 (25 bp)
CTCAGGGTCCTCTGGTTATGGGTCA
LOC_Os10g31570
OsAffx.30627.1.S1_at--971--911Chr10:16208799..16208823 (25 bp)
AGGCTCTAGCGCAGTGGCTATGGAT
LOC_Os10g31570
OsAffx.30627.1.S1_at--995--3451Chr10:16208810..16208834 (25 bp)
CAGTGGCTATGGATGGCTTTTACGG
LOC_Os10g31570
Target Sequence 
TGGACTATCCCATGCTGCAAGAGTAATTAGATATTCTAGTGCTAAAGGTGAAGGAGAAGGTGGAGGAGAGGGCTCTGGAT
CTGTAAGTGGTGCTGGGTCGGGTTCTGGGGGTGGCTTTGGTGCTAGCAACACTAGTAGTTCCGGGGGCTATTTTGGGACA
AGTAATGCACATGCTAATGCTGGAGGTGGAGGGAGTGGTGATGGTGGTGGACCATTAGGAAGTGTTGGGTCTGGTTCTGG
GTCTGGTTCTGGCTCTAGCTCAAGTAACAGCTCAAGCGTAATGAGAGCATGGTATGGTGGTGGAGAAGCTAATGCGGGTG
GTGTTGGTGGTGGCAATGGTGATGGATATGGCGGTGGTTACTCAGGGTCCTCTGGTTATGGGTCAGGGTTTGGAACCGGT
GGAGGCTCTAGCGCAGTGGCTATGGATGGCTTTTACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis