Browse Element(s) Details


OsAffx.30647.1.S1_x_at

Description tigr:9638.m02871
TID=OsAffx.30647.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3294011/11expressed protein
LOC_Os10g329303/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32970Os.415.1.S1_at10/1110+16928803..16932188Eukaryotic translation initiation factor 4E-2, putative, expressed
LOC_Os10g32980Os.3206.1.S1_at11/1110+16932660..16937186Cellulose synthase A catalytic subunit 4, putative, expressed
LOC_Os10g32990Os.46117.1.S1_at10/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.8923.1.A1_at2/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990OsAffx.30096.1.S1_x_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.10728.1.S1_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30647.1.S1_x_at--550--871Chr10:16914800..16914824 (25 bp)
ATGGCGACGACAGCGAAGGGCGCCG
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--1063--4152Chr10:16914861..16914885 (25 bp)
CGCCGCGGCCGGTGAGGCAGCTGTA
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--448--3392Chr10:16914878..16914902 (25 bp)
CAGCTGTACTGGAAGCTGAGGTCGA
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--43--8892Chr10:16914894..16914918 (25 bp)
TGAGGTCGAGGTTGCGGTCGTCGTC
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--225--7811Chr10:16914909..16914933 (25 bp)
GGTCGTCGTCGTCGAAGCGGCACGG
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--363--4611Chr10:16914950..16914974 (25 bp)
GCGAGGTTCGGGTACGACCTTCAGA
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--7--7911Chr10:16914954..16914978 (25 bp)
GGTTCGGGTACGACCTTCAGAGCTA
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--559--6991Chr10:16914961..16914985 (25 bp)
GTACGACCTTCAGAGCTATTCCCGG
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--423--1851Chr10:16914963..16914987 (25 bp)
ACGACCTTCAGAGCTATTCCCGGAA
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--1089--1711Chr10:16914966..16914990 (25 bp)
ACCTTCAGAGCTATTCCCGGAACTT
LOC_Os10g32940
OsAffx.30647.1.S1_x_at--585--10491Chr10:16914969..16914993 (25 bp)
TTCAGAGCTATTCCCGGAACTTCGA
LOC_Os10g32940
Target Sequence 
ATGGCGACGACAGCGAAGGGCGCCGGCGCAGGGAGGCGGCGGTCGTCGGCGGCGGTGGCGGCGCCGCGGCCGGTGAGGCA
GCTGTACTGGAAGCTGAGGTCGAGGTTGCGGTCGTCGTCGTCGAAGCGGCACGGCGGCGGCGGCGCGGCGGCGAGGTTCG
GGTACGACCTTCAGAGCTATTCCCGGAACTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30647.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis