Browse Element(s) Details


OsAffx.30659.1.S1_at

Description tigr:9638.m02944
TID=OsAffx.30659.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3364011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33600OsAffx.18505.1.S1_at11/1110+17386921..17387154hypothetical protein
LOC_Os10g33610OsAffx.9656.1.S1_x_at3/1110+17390836..17391330hypothetical protein
LOC_Os10g33610OsAffx.9656.3.S1_x_at2/1110+17390836..17391330hypothetical protein
LOC_Os10g33620Os.3046.1.S1_at11/1110+17393077..17395609Ubiquitin family protein, expressed
LOC_Os10g33630Os.3042.1.S1_at10/1110+17397043..17400163Adaptin ear-binding coat-associated protein 2, putative, expressed
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30659.1.S1_at--871--10111Chr10:17405005..17405029 (25 bp)
TATGAAATGCTAGTGGGCTATCCCC
LOC_Os10g33640
OsAffx.30659.1.S1_at--282--4211Chr10:17405027..17405051 (25 bp)
CCCCATTCTATTCTGATGAGCCTAT
LOC_Os10g33640
OsAffx.30659.1.S1_at--340--91Chr10:17405036..17405060 (25 bp)
ATTCTGATGAGCCTATGACAACTTG
LOC_Os10g33640
OsAffx.30659.1.S1_at--268--8391Chr10:17405250..17405274 (25 bp)
GGCGAACACATTTGAAATTTCCTGA
LOC_Os10g33640
OsAffx.30659.1.S1_at--61--5151Chr10:17405313..17405337 (25 bp)
GCAAACTCTTATGCAATGTTGACCA
LOC_Os10g33640
OsAffx.30659.1.S1_at--7--731Chr10:17405328..17405352 (25 bp)
ATGTTGACCAACGTCTTGGCACAAA
LOC_Os10g33640
OsAffx.30659.1.S1_at--1103--2291Chr10:17405500..17405522 (23 bp)
AAAGGAGCACTCCTGGTTTAGTGGA
LOC_Os10g33640
OsAffx.30659.1.S1_at--689--5391Chr10:17405550..17405574 (25 bp)
GAAGCAGCATATCAACCTCAAGTCA
LOC_Os10g33640
OsAffx.30659.1.S1_at--1147--7471Chr10:17406015..17406039 (25 bp)
GTGGGCTACACGTACAAGAACTTCG
LOC_Os10g33640
OsAffx.30659.1.S1_at--846--5291Chr10:17406316..17406340 (25 bp)
GAAGGCTAAGAGACCAAGCGCCAAA
LOC_Os10g33640
OsAffx.30659.1.S1_at--923--2671Chr10:17406339..17406363 (25 bp)
AATCCCTCTTTGGTATTCCCTCAAG
LOC_Os10g33640
Target Sequence
TATGAAATGCTAGTGGGCTATCCCCCATTCTATTCTGATGAGCCTATGACAACTTGCAGAAAGATAGTGAATTGGCGAAC
ACATTTGAAATTTCCTGAAGAAGCAAGGCTAATGACAGATGCAAAAGATCTTATAAGCAAACTCTTATGCAATGTTGACC
AACGTCTTGGCACAAAAGGGGCCGAGGAAATAAAGGAGCACTCCTGGTTTAGTGGAGTAGAATGGGACAAATTATATGAA
ATAGAAGCAGCATATCAACCTCAAGTCACTGATGAGTTAGATACTCAGAATTTTGAGAAGTTTGAAGAGTCTTCAGACAA
TATTCAATGTTCAGCAAAGGCGGGACCTTGGAGAAAGATGCTGTCTTCAAAGGATTTGAATTTTGTGGGCTACACGTACA
AGAACTTCGAACTTGTGAATGATCCTGAAGTACTTGGAATGGCTGAGTTGAAGAAGAAGGAGAAGGCTAAGAGACCAAGC
GCCAAATCCCTCTTTGGTATTCCCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis