Browse Element(s) Details


OsAffx.30664.1.S1_s_at

Description gb:NM_197041.1
DB_XREF= gi:37535441
TID=OsAffx.30664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012L23.38), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g367601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36730Os.7125.1.S1_at11/119+21189041..21190257Myb-related protein Hv1, putative, expressed
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30664.1.S1_s_at--410--6212Chr10:17848358..17848382 (25 bp)
GAGGCGGTGTCGAGGTGCAAGGCGA
NONE
OsAffx.30664.1.S1_s_at--96--5931Chr10:17848400..17848424 (25 bp)
GAGCATGTGGTCTACCTCCGGGCGC
NONE
OsAffx.30664.1.S1_s_at--724--791Chr10:17848404..17848428 (25 bp)
ATGTGGTCTACCTCCGGGCGCTGCG
NONE
OsAffx.30664.1.S1_s_at--187--7291Chr10:17848428..17848452 (25 bp)
GTGCCATGGGCGTCGCCCTGCTGCA
NONE
OsAffx.30664.1.S1_s_at--580--4271Chr10:17848444..17848468 (25 bp)
CCTGCTGCAGTTCGCCAGTGTCGAT
NONE
OsAffx.30664.1.S1_s_at--528--1231Chr10:17848452..17848476 (25 bp)
AGTTCGCCAGTGTCGATGCAGACCA
NONE
OsAffx.30664.1.S1_s_at--954--7451Chr10:17848461..17848485 (25 bp)
GTGTCGATGCAGACCATCCGAGGCA
NONE
OsAffx.30664.1.S1_s_at--522--6331Chr10:17848466..17848490 (25 bp)
GATGCAGACCATCCGAGGCAGATTC
NONE
OsAffx.30664.1.S1_s_at--229--5851Chr10:17848472..17848496 (25 bp)
GACCATCCGAGGCAGATTCCGCGAT
NONE
OsAffx.30664.1.S1_s_at--857--551Chr10:17848476..17848500 (25 bp)
ATCCGAGGCAGATTCCGCGATCTCG
NONE
OsAffx.30664.1.S1_s_at--412--4531Chr10:17848670..17848694 (25 bp)
GCCGCCGCATGCTTCAGAAGAGGAG
NONE
Target Sequence 
GAGGCGGTGTCGAGGTGCAAGGCGAGGCGGGACATGGCGGCGGAGCATGTGGTCTACCTCCGGGCGCTGCGTGCCATGGG
CGTCGCCCTGCTGCAGTTCGCCAGTGTCGATGCAGACCATCCGAGGCAGATTCCGCGATCTCGGGCCGCTGCCGGCACGC
GCCGCCCTCACCTCTGCCTCCATGCCACCGTCGGTAGCGCCGCCGTGCTGTGTCGCCTCGTCTTCCCCCGCCGCCGCATG
CTTCAGAAGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30664.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis