Browse Element(s) Details


OsAffx.30666.1.S1_at

Description tigr:9638.m03014
TID=OsAffx.30666.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3428010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34230Os.46895.1.S1_at11/1110+17940722..17944919Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os10g34240OsAffx.18513.1.S1_at11/1110+17947169..17947957hypothetical protein
LOC_Os10g34260OsAffx.30146.1.S1_s_at11/1110+17952008..17952761hypothetical protein
LOC_Os10g34260OsAffx.30146.2.S1_x_at8/1110+17952008..17952761hypothetical protein
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein
LOC_Os10g34280OsAffx.30666.1.S1_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30666.1.S1_x_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30667.1.S1_at1/1110+17958467..17958872hypothetical protein
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30666.1.S1_at--440--7751Chr10:17958801..17958825 (25 bp)
GGTCATCGTCCAAGGCCCGCCGTGC
LOC_Os10g34280
OsAffx.30666.1.S1_at--1128--5151Chr10:17958763..17958787 (25 bp)
GCAAGATGACCGTCCTCGAGCTCCA
LOC_Os10g34280
OsAffx.30666.1.S1_at--615--4811Chr10:17958732..17958756 (25 bp)
GCTCTGCGTCGCATGCTCGGACATG
LOC_Os10g34280
OsAffx.30666.1.S1_at--377--9151NONE
TGCGTCGCATGCTCGGACATGGTTA
NONE
OsAffx.30666.1.S1_at--172--7231Chr10:17958543..17958749 (25 bp)
GTCGCATGCTCGGACATGGTTATGA
LOC_Os10g34280
OsAffx.30666.1.S1_at--171--3791Chr10:17958535..17958741 (25 bp)
CTCGGACATGGTTATGATGCCGTCT
LOC_Os10g34280
OsAffx.30666.1.S1_at--955--2111Chr10:17958530..17958550 (21 bp)
ACATGGTTATGATGCCGTCTGGAAC
LOC_Os10g34280
OsAffx.30666.1.S1_at--586--6791Chr10:17958525..17958549 (25 bp)
GTTATGATGCCGTCTGGAACAGGAT
LOC_Os10g34280
OsAffx.30666.1.S1_at--822--8851Chr10:17958521..17958545 (25 bp)
TGATGCCGTCTGGAACAGGATCTGT
LOC_Os10g34280
OsAffx.30666.1.S1_at--845--591Chr10:17958519..17958543 (25 bp)
ATGCCGTCTGGAACAGGATCTGTCC
LOC_Os10g34280
OsAffx.30666.1.S1_at--776--4471Chr10:17958517..17958541 (25 bp)
GCCGTCTGGAACAGGATCTGTCCAA
LOC_Os10g34280
Target Sequence 
GGTCATCGTCCAAGGCCCGCCGTGCCGCCATGGCGAGGGCAAGATGACCGTCCTCGAGCTCCACGGCGCGCTCTGCGTCG
CATGCTCGGACATGGTTATGATGCCGTCTGGAACAGGATCTGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis