Browse Element(s) Details


OsAffx.30671.1.S1_x_at

Description gb:NM_197087.1
DB_XREF= gi:37535533
TID=OsAffx.30671.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative pathogenesis-related protein (PR protein) (OSJNBa0029C15.15), mRNA.
PROD=putative pathogenesis-related protein (PRprotein)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g437002/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43649Os.15614.1.S1_at1/1112+27087329..27088085NA
LOC_Os12g43660Os.53319.1.S1_at11/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43660OsAffx.2477.1.S1_x_at1/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43670Os.47923.2.A1_at9/1112+27098644..27101104Erg28 like protein, expressed
LOC_Os12g43680NANA12+27107237..27108141transposon protein, putative, unclassified
LOC_Os12g43700Os.53937.1.S1_x_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700Os.53937.1.S1_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700OsAffx.30671.1.S1_x_at2/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43710OsAffx.32179.1.S1_at10/1112+27117322..27118698hypothetical protein
LOC_Os12g43720Os.54341.1.S1_at11/1112+27120899..27126815early-responsive to dehydration protein, putative, expressed
LOC_Os12g43730OsAffx.7882.1.S1_x_at1/1112+27128865..27132954expressed protein
LOC_Os12g43740NANA12+27135120..27136028oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30671.1.S1_x_at--984--1991Chr10:18086378..18086402 (25 bp)
ACTCTCGGGCGCAACTGCGCAAGGC
NONE
OsAffx.30671.1.S1_x_at--441--5832Chr10:18086693..18086717 (25 bp)
GACCGGGCGGCCTCAGATCCAGAGT
NONE
OsAffx.30671.1.S1_x_at--595--9651Chr10:18086705..18086729 (25 bp)
TCAGATCCAGAGTTGTCCGCAGCTA
NONE
OsAffx.30671.1.S1_x_at--331--6371Chr10:18086708..18086732 (25 bp)
GATCCAGAGTTGTCCGCAGCTACGA
NONE
OsAffx.30671.1.S1_x_at--1108--5012Chr10:18086723..18086747 (25 bp)
GCAGCTACGACTACAAATCCAACAG
NONE
OsAffx.30671.1.S1_x_at--814--2271Chr10:18086737..18086761 (25 bp)
AAATCCAACAGCTACAAGGGCGGCA
NONE
OsAffx.30671.1.S1_x_at--690--3271Chr10:18086742..18086766 (25 bp)
CAACAGCTACAAGGGCGGCACGATG
NONE
OsAffx.30671.1.S1_x_at--615--9851Chr10:18086749..18086773 (25 bp)
TACAAGGGCGGCACGATGTGCACCC
NONE
OsAffx.30671.1.S1_x_at--1112--2011Chr10:18086774..18086798 (25 bp)
ACTACACCGCCGTCGTCTGGAAGAA
NONE
OsAffx.30671.1.S1_x_at--868--4491Chr10:18086782..18086806 (25 bp)
GCCGTCGTCTGGAAGAACACCACCG
NONE
OsAffx.30671.1.S1_x_at--677--2152Chr10:18086843..18086867 (25 bp)
ACACCATCATGGTCTGCAGCTACTG
NONE
Target Sequence 
ACTCTCGGGCGCAACTGCGCAAGGCGCCCCGTGGCGGATGCGGAGGTGGAGCTCGCCTGGGCGGTCGACGGCGGAGACGG
GGCTCTCCCGGGCGGCAGGCGGCCAGTGGCGGAGCGGGCGGCGGCAGCAGCTGTGGCGGAGCTCGCTCGGGCGGGCGGAC
CGGGCGGCCTCAGATCCAGAGTTGTCCGCAGCTACGACTACAAATCCAACAGCTACAAGGGCGGCACGATGTGCACCCAC
TACACCGCCGTCGTCTGGAAGAACACCACCGGCGGCGGCGGCGGTCGCGTCGTCTGCACCTCCGGCGACACCATCATGGT
CTGCAGCTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30671.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis