Browse Element(s) Details


OsAffx.30708.1.S1_x_at

Description tigr:9638.m03411
TID=OsAffx.30708.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3800011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37960OsAffx.20187.1.S1_at11/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29576.5.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.13325.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29169.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30708.1.S1_x_at--617--3991Chr10:20025454..20025478 (25 bp)
CGTGCGGGATCAGGCGGGCGAGGGC
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--856--6031Chr10:20025537..20025561 (25 bp)
GAGATCCGGGAGCTCCGGAAGCCGA
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--186--3811Chr10:20025549..20025573 (25 bp)
CTCCGGAAGCCGAGCAGGATATGGC
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--1097--3471Chr10:20025563..20025587 (25 bp)
CAGGATATGGCTCGGCACGTACGCC
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--245--4531Chr10:20025741..20025765 (25 bp)
GCCGCGATGGCACACCAGGAGGAGG
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--244--971Chr10:20025763..20025787 (25 bp)
AGGACGACGACAGTCGGCGTCAGCT
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--879--1851Chr10:20025769..20025793 (25 bp)
ACGACAGTCGGCGTCAGCTCGAGGA
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--342--1911Chr10:20025829..20025853 (25 bp)
ACGTGCTGGAGATGCCGAGGCTGAT
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--545--8871Chr10:20025874..20025898 (25 bp)
TGATGATCAGCCCACCGCCGGTGAT
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--743--4491Chr10:20025890..20025914 (25 bp)
GCCGGTGATGCTCGGCCTGCAGGCG
LOC_Os10g38000
OsAffx.30708.1.S1_x_at--749--6131Chr10:20025911..20025935 (25 bp)
GGCGGACGGCGGTGGAATAATGGAC
LOC_Os10g38000
Target Sequence 
CGTGCGGGATCAGGCGGGCGAGGGCGGAGACGCGGCACCCGGTGTACCGCGGCGTGCGGTTCAGGGCGGGGAAGTGGGTG
TCGGAGATCCGGGAGCTCCGGAAGCCGAGCAGGATATGGCTCGGCACGTACGCCACCCCCGAGATGGCCGCCGCGGCGTA
CGACGCCGCCGCACTGGCGCTGCGCGGGCGCGGCGCGGCGCTCAACTTCCCCGACGCCGCGCGGTCGCGCCCCGCCCCGG
CGTCCGCGTCCGCCGACGACGTGCGCGCCGCGGCCACCGCCGCCGCCGCCGCGATGGCACACCAGGAGGAGGACGACGAC
AGTCGGCGTCAGCTCGAGGACGGGGGCGGCGGCGGCGGCGTGGTGGACGAGGACGACGTGCTGGAGATGCCGAGGCTGAT
GGTGAGCATGGCGGAGGGGCTGATGATCAGCCCACCGCCGGTGATGCTCGGCCTGCAGGCGGACGGCGGTGGAATAATGG
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30708.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis