Browse Element(s) Details


OsAffx.30715.2.S1_s_at

Description tigr:9638.m03498
TID=OsAffx.30715.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative polyamine oxidase, 3-partial
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3885011/11amine oxidase, flavin-containing family protein, expressed
LOC_Os08g379401/11HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38850OsAffx.30715.2.S1_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850OsAffx.30715.2.S1_s_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850Os.52167.1.S1_x_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38860Os.46858.1.S1_at11/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_x_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009911biological_processpositive regulation of flower development
GO:0016575biological_processhistone deacetylation
GO:0008131molecular_functionamine oxidase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30715.2.S1_s_at--333--2331Chr10:20358805..20358829 (25 bp)
AAAGTTCGGTTCTAAAGCAGGCATC
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--654--2711Chr10:20358819..20358843 (25 bp)
AAGCAGGCATCATTGGCCCTGCAGT
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--394--8471Chr10:20358832..20358856 (25 bp)
TGGCCCTGCAGTCAAAATCACCTAT
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--15--8131Chr10:20358862..20358886 (25 bp)
GGACTGCCCGGGACATCATTGATCA
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--639--4431Chr10:20358915..20358939 (25 bp)
GCCATCATCATAGCAGCGGTTAATG
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--385--531Chr10:20358977..20359001 (25 bp)
ATCGACTGGCATGTTGTGCTTGCAG
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--351--3631Chr10:20358995..20359019 (25 bp)
CTTGCAGTTGGCTTGGGTGCCAAAT
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--630--7671Chr10:20359059..20359083 (25 bp)
GGGATTCAGCATGGTTTCATTTGCA
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--257--7931Chr10:20359141..20359165 (25 bp)
GGATTAAACCAGTTCATTGTTCAGA
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--397--6892Chr10:20359206..20359230 (25 bp)
GTATAGTTCTTGTTGTTTCTAGCAA
LOC_Os10g38850
OsAffx.30715.2.S1_s_at--158--6971Chr10:20359297..20359321 (25 bp)
GTAGCGTTTGTATATCCTTTGGCCT
LOC_Os10g38850
Target Sequence 
AAAGTTCGGTTCTAAAGCAGGCATCATTGGCCCTGCAGTCAAAATCACCTATGAAGGGGACTGCCCGGGACATCATTGAT
CAGATCAGCACATTCGTTTTTGTGATCGTTGCCATCATCATAGCAGCGGTTAATGGTCTTTCTGGGACAATCGAATGTGT
AAACTTCTGTGCATCGACTGGCATGTTGTGCTTGCAGTTGGCTTGGGTGCCAAATTGAGCTATATGGCTTGACTGAAGTG
CCATATGAAGATATGGGATTCAGCATGGTTTCATTTGCAATGGACACCCATATACCTTACAGGACATTAGTTTAGTTCAT
GTGTTACAATGTTAGTGGATTAAACCAGTTCATTGTTCAGAGATAACATCAAAGTAGATCCAGTCTTGTTTGCTCTTTAA
TGTATAGTTCTTGTTGTTTCTAGCAAGTAGCAACCATCTAACTTAAAGTCGGCGTCATTTAAAAGATGCAGCAGTTTAAC
AGGGAGGGTTGTGTAGCGTTTGTATATCCTTTGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30715.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis