Browse Element(s) Details


OsAffx.30720.1.S1_at

Description tigr:9638.m03544
TID=OsAffx.30720.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g392506/11hypothetical protein
LOC_Os08g265001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39200Os.6652.1.S1_x_at11/1110+20599934..20604898expressed protein
LOC_Os10g39210OsAffx.7941.1.S1_x_at11/1110+20605434..20606105copper chaperone, putative
LOC_Os10g39220Os.10820.1.S1_at10/1110+20606875..20610738tobamovirus multiplication protein 3, putative, expressed
LOC_Os10g39230Os.5988.1.S1_at11/1110+20611078..20618279tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os10g39250OsAffx.30720.1.S1_at6/1110+20625347..20626178hypothetical protein
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39270OsAffx.30721.3.S1_at11/1110+20631449..20632642Eukaryotic aspartyl protease family protein
LOC_Os10g39280OsAffx.21973.1.S1_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39280OsAffx.20167.1.S1_x_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39300Os.6792.1.S1_at7/1110+20641556..20642957Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39310OsAffx.30721.5.S1_at11/1110+20649378..20650526Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30720.1.S1_at--756--8432Chr08:16002602..16003084 (25 bp)
GGCCATTGACAAGAAACGTCGTGCT
LOC_Os08g26500
OsAffx.30720.1.S1_at--875--1411Chr10:20640938..20640962 (25 bp)
AGAAACGTCGTGCTTTCTTGTGGAC
NONE
OsAffx.30720.1.S1_at--883--7291Chr10:20640828..20640953 (25 bp)
GTGCTTTCTTGTGGACGGGATTTGC
NONE
OsAffx.30720.1.S1_at--55--3611Chr10:20640821..20640946 (25 bp)
CTTGTGGACGGGATTTGCCCTGCGT
NONE
OsAffx.30720.1.S1_at--434--8251Chr10:20640768..20640792 (25 bp)
GGCACCCCTGCTGGGATGGCCTGAA
NONE
OsAffx.30720.1.S1_at--1045--3632Chr10:20640695..20640719 (25 bp)
CTTCGTGCCGGGAAATGGTGAGTCT
NONE
OsAffx.30720.1.S1_at--566--7392Chr10:20640678..20640702 (25 bp)
GTGAGTCTATGCTCTTCTGGTCCGA
NONE
OsAffx.30720.1.S1_at--311--10612Chr10:20640664..20640688 (25 bp)
TTCTGGTCCGACCAATGGATCGATG
NONE
OsAffx.30720.1.S1_at--241--4092Chr10:20640656..20640680 (25 bp)
CGACCAATGGATCGATGGCCGCTCG
NONE
OsAffx.30720.1.S1_at--891--1632Chr10:20640591..20640615 (25 bp)
AGCGTCTTCCAGGTTCACGCACGGT
NONE
OsAffx.30720.1.S1_at--486--7812Chr10:20640559..20640583 (25 bp)
GGTCTGGCGAACAACTCCTATGTCT
NONE
Target Sequence 
GGCCATTGACAAGAAACGTCGTGCTTTCTTGTGGACGGGATTTGCCCTGCGTGTTCGCTGGCTCTGGCTTCAGCGCTCAG
GGCACCCCTGCTGGGATGGCCTGAAGTCNCNAGTCNAGCAGACCGTCTCNGACATGTTCGCGGCATCCACTTTCTTCGTG
CCGGGAAATGGTGAGTCTATGCTCTTCTGGTCCGACCAATGGATCGATGGCCGCTCGGTGGCGTCCTTGGCTCCAGATCT
CCTCTTCGTTGTTCCCCAGCGTCTTCCAGGTTCACGCACGGTTGCTTCTGGTCTGGCGAACAACTCCTATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis