Browse Element(s) Details


OsAffx.30721.5.S1_at

Description tigr:9638.m03550
TID=OsAffx.30721.5
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative nucleoid DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3931011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39250OsAffx.30720.1.S1_at6/1110+20625347..20626178hypothetical protein
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39270OsAffx.30721.3.S1_at11/1110+20631449..20632642Eukaryotic aspartyl protease family protein
LOC_Os10g39280OsAffx.21973.1.S1_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39280OsAffx.20167.1.S1_x_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39300Os.6792.1.S1_at7/1110+20641556..20642957Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39310OsAffx.30721.5.S1_at11/1110+20649378..20650526Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39320OsAffx.30721.2.S1_x_at11/1110+20653362..20654603Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.1.S1_at11/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.2.S1_x_at2/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39340OsAffx.30721.2.S1_x_at10/1110+20664132..20665325Eukaryotic aspartyl protease family protein
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39360OsAffx.7936.1.S1_at11/1110+20674266..20675525Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30721.5.S1_at--563--6671Chr10:20650001..20650025 (25 bp)
GTTCGTCAAGAGCTCTCCCGACGAC
LOC_Os10g39310
OsAffx.30721.5.S1_at--356--5791Chr10:20650020..20650044 (25 bp)
GACGACATCAAGAGCCTCTATTACC
LOC_Os10g39310
OsAffx.30721.5.S1_at--476--5871Chr10:20650031..20650055 (25 bp)
GAGCCTCTATTACCTGATCAATTTG
LOC_Os10g39310
OsAffx.30721.5.S1_at--290--4611Chr10:20650072..20650096 (25 bp)
GCGACGAGGCGATCATCACGGTGCC
LOC_Os10g39310
OsAffx.30721.5.S1_at--141--911Chr10:20650078..20650102 (25 bp)
AGGCGATCATCACGGTGCCCCAGAG
LOC_Os10g39310
OsAffx.30721.5.S1_at--509--4531Chr10:20650214..20650238 (25 bp)
GCCGCCGGAGCAATTCCAATCTATA
LOC_Os10g39310
OsAffx.30721.5.S1_at--531--8071Chr10:20650220..20650244 (25 bp)
GGAGCAATTCCAATCTATATTCGAC
LOC_Os10g39310
OsAffx.30721.5.S1_at--312--451Chr10:20650232..20650256 (25 bp)
ATCTATATTCGACCTTTGCTTCAAG
LOC_Os10g39310
OsAffx.30721.5.S1_at--247--231Chr10:20650236..20650260 (25 bp)
ATATTCGACCTTTGCTTCAAGAGAG
LOC_Os10g39310
OsAffx.30721.5.S1_at--381--5791Chr10:20650328..20650352 (25 bp)
GACGAACTATCTGCTCGACGTCGGG
LOC_Os10g39310
OsAffx.30721.5.S1_at--586--5631Chr10:20650356..20650380 (25 bp)
GACACGGTGTGCGTGGCGATCGCGA
LOC_Os10g39310
Target Sequence 
GTTCGTCAAGAGCTCTCCCGACGACATCAAGAGCCTCTATTACCTGATCAATTTGGAAGGGATAAAAGCCGGCGACGAGG
CGATCATCACGGTGCCCCAGAGCGGCCGCACCGTCCTACTTCAGACCTTCTCGCCGGTCAGCTTCCTGGTCGACGGCGTG
TACCAGGACCTCAAGAAGGCGGTGACGGCCGCCGTCGGCGGGCCGACGGCGACGCCGCCGGAGCAATTCCAATCTATATT
CGACCTTTGCTTCAAGAGAGGAGGGGTCAGCGGAGCCCCGGACGTCGTGCTCACGTTCCAGGGCGCCGCCGCGTTGACGG
TGCCGCCGACGAACTATCTGCTCGACGTCGGGGACGACACGGTGTGCGTGGCGATCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30721.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis