Browse Element(s) Details


OsAffx.30753.1.S1_at

Description tigr:9638.m03879
TID=OsAffx.30753.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative replication factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4240011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42364OsAffx.22848.4.S1_x_at3/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42364OsAffx.22848.4.S1_at2/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42390Os.50990.1.S1_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42390OsAffx.18608.1.S1_x_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42400OsAffx.30753.1.S1_at11/1110+22490090..22494225hypothetical protein
LOC_Os10g42400Os.38109.1.S1_at2/1110+22490090..22494225hypothetical protein
LOC_Os10g42404NANA10+22495316..22495540hypothetical protein
LOC_Os10g42410Os.7002.1.S1_at11/1110+22499662..22501684expressed protein
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30753.1.S1_at--259--2171Chr10:22492717..22492741 (25 bp)
ACACGCCGGCTGAATCCAAAGCTGA
LOC_Os10g42400
OsAffx.30753.1.S1_at--238--5411Chr10:22492694..22492718 (25 bp)
GAAGCTGCTTCTGAGCCACAAGTGT
LOC_Os10g42400
OsAffx.30753.1.S1_at--604--4551Chr10:22492581..22492605 (25 bp)
GCCCAAATCGGTCGCCATGGTGGAT
LOC_Os10g42400
OsAffx.30753.1.S1_at--561--7511Chr10:22492562..22492586 (25 bp)
GTGGATTCGCCACAGACTTCTGAAG
LOC_Os10g42400
OsAffx.30753.1.S1_at--783--8991Chr10:22492542..22492566 (25 bp)
TGAAGAATCCACACCCACGGCAGAG
LOC_Os10g42400
OsAffx.30753.1.S1_at--491--8251Chr10:22492503..22492527 (25 bp)
GGCAGACAAGTATCGCCCCAATTTC
LOC_Os10g42400
OsAffx.30753.1.S1_at--28--3191Chr10:22492485..22492509 (25 bp)
CAATTTCCTCAACGATTTCATCTGC
LOC_Os10g42400
OsAffx.30753.1.S1_at--149--3631Chr10:22492336..22492469 (25 bp)
CTTGAGCTCTACAACCAGGTTACCG
LOC_Os10g42400
OsAffx.30753.1.S1_at--153--251Chr10:22492296..22492320 (25 bp)
ATATCATATTTGAAGGCCCGACCTC
LOC_Os10g42400
OsAffx.30753.1.S1_at--875--7451Chr10:22492252..22492276 (25 bp)
GTGTCGGCACTCATATGGGATGCTT
LOC_Os10g42400
OsAffx.30753.1.S1_at--951--7651Chr10:22492236..22492260 (25 bp)
GGGATGCTTTTGCTACTGATAATCT
LOC_Os10g42400
Target Sequence 
ACACGCCGGCTGAATCCAAAGCTGAAGCTGCTTCTGAGCCACAAGTGTCCGCCGGCGACCACAGCACGCAGAGCTCCGAC
CACAGCGCCTCCGCCGTCGCCGTCGGGAGAGGAGGGAGCATCTGGGTCCGGGTTTTGCCCAAATCGGTCGCCATGGTGGA
TTCGCCACAGACTTCTGAAGAATCCACACCCACGGCAGAGGACAAGTACATCTGGGCAGACAAGTATCGCCCCAATTTCC
TCAACGATTTCATCTGCAACAAGGACGCTGCCCTTGAGCTCTACAACCAGGTTACCGCACAAGAATGCAACCATATCATA
TTTGAAGGCCCGACCTCCGTCGGAAAGAGGAGCATGGTGTCGGCACTCATATGGGATGCTTTTGCTACTGATAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis