Browse Element(s) Details


OsAffx.30761.2.S1_s_at

Description tigr:9639.m00012
TID=OsAffx.30761.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0110911/11hypothetical protein
LOC_Os12g0111011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01060OsAffx.30758.1.S1_at11/1111+28626..30038hypothetical protein
LOC_Os11g01074Os.15933.1.A1_s_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.2.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_x_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074OsAffx.31533.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01090NANA11+44371..50691retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01100OsAffx.30760.1.S1_at11/1111+51332..52266hypothetical protein
LOC_Os11g01109OsAffx.30761.2.S1_s_at11/1111+52703..54852hypothetical protein
LOC_Os11g01109OsAffx.30761.1.S1_at4/1111+52703..54852hypothetical protein
LOC_Os11g01118NANA11+56826..57134hypothetical protein
LOC_Os11g01130OsAffx.31534.1.S1_at11/1111+67344..67955Homeobox domain containing protein
LOC_Os11g01140Os.8642.1.S1_a_at11/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01140Os.8642.4.S1_x_at11/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01140Os.53644.1.S1_at1/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30761.2.S1_s_at--863--5552Chr12:51962..51986 (25 bp)
GAAAGTGTCTTACTGGGAACTGAGT
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--540--3272Chr12:51879..51903 (25 bp)
CAACACAGCGGGAAACGGGCGTCAA
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--179--9512Chr12:51448..51472 (25 bp)
TCTCTGAGGCTTTCTTTGCTAGTCC
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--897--1132Chr12:51428..51452 (25 bp)
AGTCCCCTTCGACACTAGTGCAATA
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--388--4592Chr12:51380..51404 (25 bp)
GCGCACGGTATTGGCAGCACCATTG
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--109--6052Chr12:51342..51366 (25 bp)
GAGTTGTCCCTAGGCTTGGCAAACC
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--818--8672Chr12:51314..51338 (25 bp)
TGTGATACCTTGTTCTCCAGTGTCA
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--411--9232Chr12:51299..51323 (25 bp)
TCCAGTGTCACCATCTTTGTCTTCA
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--761--7132Chr12:51281..51305 (25 bp)
GTCTTCAGCACATCATTTTACACCT
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--341--3572Chr12:51268..51292 (25 bp)
CATTTTACACCTTGGTCCTTGGAGC
LOC_Os12g01110
OsAffx.30761.2.S1_s_at--25--5073Chr07:12650396..12650416 (21 bp)
GCAGCTACTCTATGCATGGCTTCAT
NONE
Target Sequence 
GAAAGTGTCTTACTGGGAACTGAGTGATGGTGAGATGGCAGTGGCACTGCTAGCTGTGGTCAGGAAAAGGCAATGGGCAG
GGTCAACACAGCGGGAAACGGGCGTCAACCAACAGTGGCGCATGCAATGGGGTACATGGGCAAGATGCACCGACACTACT
TCCTCTATGCCGCTCTATGCACTGCGACCGTCTCTGAGGCTTTCTTTGCTAGTCCCCTTCGACACTAGTGCAATACTCAA
GTTGGTCGACAACCTCGCGCGCACGGTATTGGCAGCACCATTGTGTGCATCTTCCCGAGTTGTCCCTAGGCTTGGCAAAC
CTGGTGTGATACCTTGTTCTCCAGTGTCACCATCTTTGTCTTCAGCACATCATTTTACACCTTGGTCCTTGGAGCCATCC
TGCGCACGCACGACCACTCTACGATGCCCCTTGTGCGTCCTGTGGCTCGGCTACCTCGTCATCAGCACCACCGACTTCAG
CTACATTTCGACCGCAGCTACTCTATGCATGGCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30761.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis