Browse Element(s) Details


OsAffx.30790.1.S1_at

Description tigr:9639.m00211
TID=OsAffx.30790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phosphoethanolamine cytidylyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0305011/11phosphoethanolamine cytidylyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein
LOC_Os11g03050Os.38774.1.S1_s_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050OsAffx.30790.1.S1_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050Os.33623.1.S1_x_at2/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03060Os.34563.1.S1_at11/1111+1077105..1081413SNF7 family protein, expressed
LOC_Os11g03070Os.53465.1.S1_at1/1111+1084636..1087189Sodium/hydrogen exchanger family protein
LOC_Os11g03080OsAffx.6977.1.S1_at11/1111+1088498..1089132hypothetical protein
LOC_Os11g03090OsAffx.22492.1.S1_x_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified
LOC_Os11g03090OsAffx.22492.1.S1_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004105molecular_functioncholine-phosphate cytidylyltransferase activity
GO:0004306molecular_functionethanolamine-phosphate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30790.1.S1_at--1--7472Chr12:1000907..1000931 (25 bp)
GTGTGAATCACTGGACCTTGACAAA
NONE
OsAffx.30790.1.S1_at--1059--8451Chr11:1070128..1070152 (25 bp)
TGGCTGGCTGCCAAATGGTCGCAAT
LOC_Os11g03050
OsAffx.30790.1.S1_at--847--2971Chr11:1070115..1070139 (25 bp)
AATGGTCGCAATCTGCTGGTTCAGT
LOC_Os11g03050
OsAffx.30790.1.S1_at--931--7992Chr11:1070063..1070087 (25 bp)
GGATGTGCTACCTGTGATCTCCAAA
LOC_Os11g03050
OsAffx.30790.1.S1_at--537--2733Chr12:1000714..1000738 (25 bp)
AAGCAACTTACACTGTTTCTGGCCG
NONE
OsAffx.30790.1.S1_at--1083--10592Chr12:1000698..1000722 (25 bp)
TTCTGGCCGCTGATTACTTGATTTG
NONE
OsAffx.30790.1.S1_at--319--10233Chr12:1000650..1000674 (25 bp)
TTTGGCTTGGCTTTGATTTTGGACT
NONE
OsAffx.30790.1.S1_at--1139--10412Chr12:1000596..1000620 (25 bp)
TTATCACTCTATCTTGCTCACATGT
NONE
OsAffx.30790.1.S1_at--863--8973Chr12:1000525..1000549 (25 bp)
TGAACACGCGTGACTTGATGGACTC
NONE
OsAffx.30790.1.S1_at--966--1993Chr12:1000504..1000528 (25 bp)
ACTCGAGTGTCTGTTCTGTTTGGTA
NONE
OsAffx.30790.1.S1_at--462--1411Chr11:1069712..1069736 (25 bp)
AGACATGCACTTTCTAGCTCCAGTT
LOC_Os11g03050
Target Sequence 
GTGTGAATCACTGGACCTTGACAAAATGGTTGCAAGCAGTGGCTGGCTGCCAAATGGTCGCAATCTGCTGGTTCAGTGTG
GTATACGTTAATCGCCATGGAAAGGGATGTGCTACCTGTGATCTCCAAACAGTAGCACACTGATGAGCAGCCGGGGCACG
AGGCTCTGGGGCAGCCTGTGCCTGCTCTCCTGTAAGCAACTTACACTGTTTCTGGCCGCTGATTACTTGATTTGCCTGCC
AATATATGTTGGCTTGGTTTGGCTTGGCTTTGATTTTGGACTGTGACACATGTCTAGTAGCTTTTGTGTGTTTATCACTC
TATCTTGCTCACATGTGAATGGACCTGCAGAGCTATGGTAAATAGAACAGTACTACGTGTTATGAACACGCGTGACTTGA
TGGACTCGAGTGTCTGTTCTGTTTGGTACACCATTTCATTTTTTTTTCTTGGAGGAGACATGCACTTTCTAGCTCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis