Browse Element(s) Details


OsAffx.30819.1.S1_at

Description tigr:9639.m00389
TID=OsAffx.30819.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0454011/11hypothetical protein
LOC_Os11g0476010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04480Os.23206.1.S1_at10/1112+1905049..1908150Cytochrome P450 family protein, expressed
LOC_Os12g04490NANA12+1911221..1912258hypothetical protein
LOC_Os12g04500Os.37430.1.S1_at5/1112+1914875..1916596Two-component response regulator ARR8, putative, expressed
LOC_Os12g04510Os.9249.1.S1_at10/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04510Os.37965.1.S1_at1/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04520Os.18691.1.S1_at5/1112+1921577..1925626mitochondrial L-galactono-1,4-lactone dehydrogenase, putative
LOC_Os12g04530OsAffx.19491.1.S1_at11/1112+1925876..1927095hypothetical protein
LOC_Os12g04540OsAffx.30819.1.S1_at11/1112+1928974..1930164hypothetical protein
LOC_Os12g04550OsAffx.22355.1.S1_at1/1112+1931308..1932151retrotransposon protein, putative, unclassified
LOC_Os12g04560OsAffx.19494.1.S1_at5/1112+1932481..1932809Calmodulin, putative
LOC_Os12g04570OsAffx.31579.1.S1_at10/1112+1933614..1935143hypothetical protein
LOC_Os12g04570Os.52519.1.S1_at5/1112+1933614..1935143hypothetical protein
LOC_Os12g04580OsAffx.19494.1.S1_at5/1112+1936309..1936617Calmodulin-related protein 97A, putative
LOC_Os12g04590Os.40368.1.A1_s_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590OsAffx.31580.1.S1_x_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590Os.55645.1.S1_at4/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04610Os.54131.1.S1_at10/1112+1948575..1951619expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30819.1.S1_at--1063--9172Chr12:1929539..1929563 (25 bp)
TGCCGGTTGTAATCGTCATGTCCTA
LOC_Os12g04540
OsAffx.30819.1.S1_at--485--9252Chr12:1929519..1929543 (25 bp)
TCCTATGTGGTGGTTGATGCCTACA
LOC_Os12g04540
OsAffx.30819.1.S1_at--472--10852Chr12:1929492..1929516 (25 bp)
TTGGTATCATTCAATCAGCCATGGG
LOC_Os12g04540
OsAffx.30819.1.S1_at--807--7592Chr12:1929469..1929493 (25 bp)
GGGCACGTATGCATTTGACACCAAC
LOC_Os12g04540
OsAffx.30819.1.S1_at--772--2112Chr12:1929385..1929409 (25 bp)
ACATGGCTCTGTGTTCCTTGGCTTA
LOC_Os12g04540
OsAffx.30819.1.S1_at--735--10152Chr12:1929333..1929357 (25 bp)
TATCGCATCAATGTCACAACTTCTG
LOC_Os12g04540
OsAffx.30819.1.S1_at--739--712Chr12:1929299..1929323 (25 bp)
ATGATCCTTGCTTATCCATCGTTGT
LOC_Os12g04540
OsAffx.30819.1.S1_at--1146--6612Chr12:1929279..1929303 (25 bp)
GTTGTGCTCCCGGTGAAATACATGG
LOC_Os12g04540
OsAffx.30819.1.S1_at--161--8872Chr12:1929244..1929268 (25 bp)
TGATGCAGGGTCATGCTTCTTTTCC
LOC_Os12g04540
OsAffx.30819.1.S1_at--947--5472Chr12:1929097..1929121 (25 bp)
GAACACTTCACCATTGGAGGCTCCA
LOC_Os12g04540
OsAffx.30819.1.S1_at--324--2812Chr12:1929009..1929033 (25 bp)
AAGATTTCCTGTTCATCCCATGGGT
LOC_Os12g04540
Target Sequence 
TGCCGGTTGTAATCGTCATGTCCTATGTGGTGGTTGATGCCTACATATTGGTATCATTCAATCAGCCATGGGGCACGTAT
GCATTTGACACCAACTCAATCAAGTGGCACAAGGTTGANNACAAGANGCTACCTTTCACCGGATGCGCCGCCCCACATGG
CTCTGTGTTCCTTGGCTTATCNAANGANAANGGNCCCATCAATGCTTATCGCATCAATGTCACAACTTCTGACAAGNANN
ATGATCCTTGCTTATCCATCGTTGTGCTCCCGGTGAAATACATGGAACATGAAGTTGATGCAGGGTCATGCTTCTTTTCC
TTGGAGGATGGACTCTTCTGTTCNTTANGTTTCTCGCTTGACAGCANCAGCGTGATTCNNTCCAAGAACCTNGANNTTTT
TCCAACCAAGGCACANGTAGACNTGAGAACCTATCAAACAGAGAACACTTCACCATTGGAGGCTCCAGAGGAAACATTGN
TNGCNGTGAAGCCNGAGGTTACAGTCTGCANCCAATNGGAACAGGCCTTCAAGATTTCCTGTTCATCCCATGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis