Browse Element(s) Details


OsAffx.30825.1.S1_at

Description tigr:9639.m00439
TID=OsAffx.30825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0523011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05200OsAffx.30824.1.S1_at11/1111+2293555..2294286Zinc finger, C3HC4 type family protein
LOC_Os11g05210OsAffx.24267.1.S1_at1/1111+2295691..2302619retrotransposon protein, putative, unclassified
LOC_Os11g05220Os.14919.1.S1_at5/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220OsAffx.29313.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220Os.56216.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05230OsAffx.30825.1.S1_at11/1111+2314669..2315574Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g05240OsAffx.30826.1.S1_at11/1111+2317594..2319117PAN domain containing protein
LOC_Os11g05250NANA11+2320717..2323376hypothetical protein
LOC_Os11g05260Os.9756.1.S1_a_at11/1111+2325827..2329111phosphoglycerate mutase family protein, expressed
LOC_Os11g05270OsAffx.18683.1.S1_at11/1111+2331554..2332567hypothetical protein
LOC_Os11g05280Os.55754.1.S1_x_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05280Os.21883.1.S1_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05290Os.15841.1.S1_a_at11/1111+2339479..2340541expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30825.1.S1_at--655--6091Chr11:2314974..2314998 (25 bp)
GAGTCACAGCTACGAGGACACCATT
LOC_Os11g05230
OsAffx.30825.1.S1_at--862--951Chr11:2314988..2315012 (25 bp)
AGGACACCATTATCGTAGGCAGCAC
LOC_Os11g05230
OsAffx.30825.1.S1_at--56--4831Chr11:2315024..2315048 (25 bp)
GCTCAAGCCTCCATCACGGAGACGA
LOC_Os11g05230
OsAffx.30825.1.S1_at--428--3931Chr11:2315114..2315138 (25 bp)
CGGCGCCATTGGAAGCGATGACGAT
LOC_Os11g05230
OsAffx.30825.1.S1_at--251--911Chr11:2315164..2315188 (25 bp)
AGGCGGCGACAAGGCACCACCAATG
LOC_Os11g05230
OsAffx.30825.1.S1_at--856--8251Chr11:2315176..2315200 (25 bp)
GGCACCACCAATGGCGACGGACAAA
LOC_Os11g05230
OsAffx.30825.1.S1_at--404--5751Chr11:2315191..2315215 (25 bp)
GACGGACAAACCATTCTCATCCAAA
LOC_Os11g05230
OsAffx.30825.1.S1_at--886--2271Chr11:2315213..2315237 (25 bp)
AAAGGCTTGGCGAGCTACTACGGGC
LOC_Os11g05230
OsAffx.30825.1.S1_at--891--4771Chr11:2315368..2315392 (25 bp)
GCTGCGGCGCAATGCGTGATATGCA
LOC_Os11g05230
OsAffx.30825.1.S1_at--419--6311Chr11:2315413..2315437 (25 bp)
GATGACATCAGCGTGATGCCGTGCT
LOC_Os11g05230
OsAffx.30825.1.S1_at--1050--7371Chr11:2315425..2315449 (25 bp)
GTGATGCCGTGCTCGTACGGGCACA
LOC_Os11g05230
Target Sequence 
GAGTCACAGCTACGAGGACACCATTATCGTAGGCAGCACGGACGACGCCGGCTCAAGCCTCCATCACGGAGACGACGAGC
TCCCGGTTCCGCTTCCGCCGGCCGAACTTCCGCCGCCCGGTTCCGCCGGCAATGCGCCGCCGGCGCCATTGGAAGCGATG
ACGATGAGCTTCTTGCAAGAAGCGGCGATGAGGCGGCGACAAGGCACCACCAATGGCGACGGACAAACCATTCTCATCCA
AAGGCTTGGCGAGCTACTACGGGCTTACCGCGCCAACGCCGCCGGCGGCGCAAACGGCGGCGGCGCCCCCAGGTCCGGAA
GACAACGGCCGGCCTCGGCAGCGGCGGTGGCGGCGCTGGAGAAGCGCAAGCACGGCTGCGGGGGCGGCGGCGGGGCTGCG
GCGCAATGCGTGATATGCATCGAGGATTACGAGGTGGGCGATGACATCAGCGTGATGCCGTGCTCGTACGGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis