Browse Element(s) Details


OsAffx.30829.1.A1_at

Description tigr:9638.m01538
TID=OsAffx.30829.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1845011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein
LOC_Os10g18470OsAffx.20523.1.S1_x_at11/1110+9052638..9053192expressed protein
LOC_Os10g18470OsAffx.20523.1.S1_at11/1110+9052638..9053192expressed protein
LOC_Os10g18480Os.25230.2.A1_at4/1110+9054309..9055175Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os10g18490NANA10+9057750..9058355Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g18500OsAffx.6691.1.S1_at11/1110+9059072..9059563hypothetical protein
LOC_Os10g18510NANA10+9061841..9064122UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os10g18520NANA10+9064903..9065118hypothetical protein
LOC_Os10g18530NANA10+9068364..9069065Cytokinin-O-glucosyltransferase 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30829.1.A1_at--461--4971Chr10:9045930..9045954 (25 bp)
GCATCTTGCAGTACATGCGCAAACA
LOC_Os10g18450
OsAffx.30829.1.A1_at--807--591Chr10:9045944..9045968 (25 bp)
ATGCGCAAACATGGCCGACGCAAAC
LOC_Os10g18450
OsAffx.30829.1.A1_at--381--4091Chr10:9045959..9045983 (25 bp)
CGACGCAAACATCACAGACGCTGTA
LOC_Os10g18450
OsAffx.30829.1.A1_at--401--2111Chr10:9046136..9046156 (21 bp)
ACATGCTTCTGCCAATCTTCTAACT
LOC_Os10g18450
OsAffx.30829.1.A1_at--504--8371Chr10:9046180..9046204 (25 bp)
GGCGTTCACCGTTCAGTAGTCCATG
LOC_Os10g18450
OsAffx.30829.1.A1_at--360--7571Chr10:9046208..9046232 (25 bp)
GGGCGCCAGAACACAATATCGATGT
LOC_Os10g18450
OsAffx.30829.1.A1_at--698--10631Chr10:9046232..9046256 (25 bp)
TTCGACTGGCTGGACATTACGGCGG
LOC_Os10g18450
OsAffx.30829.1.A1_at--917--6231Chr10:9046321..9046345 (25 bp)
GATGGAGTACTTGTTGCTCCTGCGG
LOC_Os10g18450
OsAffx.30829.1.A1_at--945--1831Chr10:9046352..9046376 (25 bp)
ACGCTGTAGCGGAGTCATGTCGAGA
LOC_Os10g18450
OsAffx.30829.1.A1_at--848--2911Chr10:9046460..9046484 (25 bp)
AAGGAGCCGTAGAATCTCGCGATGC
LOC_Os10g18450
OsAffx.30829.1.A1_at--514--8671Chr10:9046516..9046540 (25 bp)
TGTGTCCCCACTGGCGACGCAGAAG
LOC_Os10g18450
Target Sequence 
GCATCTTGCAGTACATGCGCAAACATGGCCGACGCAAACATCACAGACGCTGTACATCTCCATGGACGACATGCTTCTGC
CAATCTTCTAACTTCGCGCCCCAATTCTCCGTCGGTGGCGTTCACCGTTCAGTAGTCCATGCTGGGGCGCCAGAACACAA
TATCGATGTTCGACTGGCTGGACATTACGGCGGCGGCGTAGTACGGGTGATCGTCGGACAGGGCGGCGGAGAGAGTGACG
GCGTGGATGTGGATGATGATGGAGTACTTGTTGCTCCTGCGGGCGTTGACGCTGTAGCGGAGTCATGTCGAGAGGGCGAT
ACGCGAGCCGGTGCAGAGGTTGAGCAGCGCGTGGCCGCGCGACTCGGGGAGCTCGGCGGCGAGCCAGCCGCCCGGGAAGG
AGCCGTAGAATCTCGCGATGCGGGCGTCGGCGAAGAGGCCGGGACGGTGGTGTGTGTCCCCACTGGCGACGCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30829.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis