Browse Element(s) Details


OsAffx.3084.1.S1_at

Description tigr:9630.m05545
TID=OsAffx.3084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5590011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55860NANA2+34185762..34188116retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g55870Os.20580.1.S1_at11/112+34193672..34197835Heparanase-like protein 3 precursor, putative, expressed
LOC_Os02g55880OsAffx.3083.1.S1_at9/112+34201091..34203972EF hand family protein, expressed
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3084.1.S1_at--872--8471Chr02:34211333..34211419 (25 bp)
TGGCGACACACACTACGAGGGCATG
LOC_Os02g55900
OsAffx.3084.1.S1_at--832--3191Chr02:34211723..34211747 (25 bp)
CAATGCAGCTTACTCCTACTTAATT
LOC_Os02g55900
OsAffx.3084.1.S1_at--646--1291Chr02:34211907..34211931 (25 bp)
AGATCCTCTTCTACCATTTTTCAAT
LOC_Os02g55900
OsAffx.3084.1.S1_at--877--791Chr02:34212593..34212617 (25 bp)
ATGGGCTACCTATTGGGCTCACCAA
LOC_Os02g55900
OsAffx.3084.1.S1_at--729--2111Chr02:34213151..34213171 (21 bp)
ACAGGGCCACAGTACTTTGTTGCAA
LOC_Os02g55900
OsAffx.3084.1.S1_at--988--10251Chr02:34213162..34213186 (25 bp)
TTTGTTGCAACTCCGAACTCTGAAT
LOC_Os02g55900
OsAffx.3084.1.S1_at--720--2331Chr02:34213212..34213236 (25 bp)
AAAGAGCCGGGTCATCATCACAGTC
LOC_Os02g55900
OsAffx.3084.1.S1_at--957--7091Chr02:34213234..34213258 (25 bp)
GTCACAGATAGCTTTGTCTCACCTA
LOC_Os02g55900
OsAffx.3084.1.S1_at--469--7471Chr02:34214547..34214571 (25 bp)
GTGTGTTTATCCACCACTAATTTCC
LOC_Os02g55900
OsAffx.3084.1.S1_at--860--5551Chr02:34214581..34214605 (25 bp)
GAAAGCTGTTCCATAATCCTCTCAG
LOC_Os02g55900
OsAffx.3084.1.S1_at--1117--1831Chr02:34214633..34214657 (25 bp)
ACGCTATGAACTTGGCTTGACTGAT
LOC_Os02g55900
Target Sequence 
TGGCGACACACACTACGAGGGCATGCAATGCAGCTTACTCCTACTTAATTAGCAGCTTTTACTCCAAGTTAAGTGCCCAA
CGAGGAACACTCTACAAAGATCCTCTTCTACCATTTTTCAATGCGAGCTGCAAAACAAACCGAAATGCAGACGCAACACT
GCAAGTCTGCAACAGGGATGCCAATGCCAATGCCAATGCCGAAGCCCATGGGCTACCTATTGGGCTCACCAAGACAGGGC
CACAGTACTTTGTTGCAACTCCGAACTCTGAATTGCAGCTCCCAATCATTGTCCGGCGAAAGAGCCGGGTCATCATCACA
GTCACAGATAGCTTTGTCTCACCTAAGAGCAGTGGTGTGTGTTTATCCACCACTAATTTCCTTGTGCTTGGAAAGCTGTT
CCATAATCCTCTCAGCAATGAGTGTATTATTGACTTGGTTTCACGCTATGAACTTGGCTTGACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis