Browse Element(s) Details


OsAffx.30841.1.S1_at

Description tigr:9639.m00574
TID=OsAffx.30841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0645011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06400OsAffx.27522.1.S1_x_at7/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.16187.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_x_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06410Os.7265.1.S1_at11/1111+3087445..3092224expressed protein
LOC_Os11g06410Os.55232.1.S1_at1/1111+3087445..3092224expressed protein
LOC_Os11g06420Os.17428.1.S1_at11/1111+3094367..3098577Tubby protein, putative, expressed
LOC_Os11g06430OsAffx.30842.1.S1_at9/1111+3100925..3102996hypothetical protein
LOC_Os11g06440Os.26735.1.S1_at11/1111+3106479..3108332expressed protein
LOC_Os11g06450OsAffx.30841.1.S1_at11/1111+3108856..3109796hypothetical protein
LOC_Os11g06460OsAffx.7016.1.S1_at11/1111+3112202..3114482Ribosome inactivating protein, expressed
LOC_Os11g06470OsAffx.31174.4.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06470OsAffx.31174.5.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06480OsAffx.30843.1.S1_at11/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.18707.1.S1_at2/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.15945.1.S1_at1/1111+3127729..3130185hypothetical protein
LOC_Os11g06490OsAffx.18707.1.S1_at8/1111+3130789..3132533Ribosome inactivating protein
LOC_Os11g06500OsAffx.20387.1.S1_x_at1/1111+3133931..3136258retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30841.1.S1_at--377--4551Chr11:3109674..3109698 (25 bp)
GCGCCAAGAAACAAACACCTCATCA
LOC_Os11g06450
OsAffx.30841.1.S1_at--497--3351Chr11:3109659..3109683 (25 bp)
CACCTCATCATCAAGCCAATGCAAT
LOC_Os11g06450
OsAffx.30841.1.S1_at--724--5131Chr11:3109639..3109663 (25 bp)
GCAATTCAACCCCACAAAAAGGCCT
LOC_Os11g06450
OsAffx.30841.1.S1_at--67--2951Chr11:3109621..3109645 (25 bp)
AAGGCCTTCCGAATGATACAGCTCA
LOC_Os11g06450
OsAffx.30841.1.S1_at--770--8831Chr11:3109608..3109632 (25 bp)
TGATACAGCTCACATCATCACACCA
LOC_Os11g06450
OsAffx.30841.1.S1_at--420--3311Chr11:3109581..3109605 (25 bp)
CACACATCTGCACAAGGTCTCTGTA
LOC_Os11g06450
OsAffx.30841.1.S1_at--944--2891Chr11:3109568..3109592 (25 bp)
AAGGTCTCTGTAACTGCTACTGCTG
LOC_Os11g06450
OsAffx.30841.1.S1_at--687--9711Chr11:3109289..3109309 (21 bp)
TCAATACTACATTTTCAGAGGCCTG
LOC_Os11g06450
OsAffx.30841.1.S1_at--498--9651Chr11:3109001..3109021 (21 bp)
TCAGAGGCCTGAGTTTTGGTGTCAG
LOC_Os11g06450
OsAffx.30841.1.S1_at--398--2191Chr11:3108974..3108998 (25 bp)
ACAACTACAAGTCCAGAACCATGAA
LOC_Os11g06450
OsAffx.30841.1.S1_at--121--331Chr11:3108889..3108913 (25 bp)
ATACAGGAGTACATCTAACCAAGCT
LOC_Os11g06450
Target Sequence 
GCGCCAAGAAACAAACACCTCATCATCAAGCCAATGCAATTCAACCCCACAAAAAGGCCTTCCGAATGATACAGCTCACA
TCATCACACCAGCCACACATCTGCACAAGGTCTCTGTAACTGCTACTGCTGATGATGAATCATTGTTCATCAGGATGATA
TATGATTCACATGAAGAACAGAAGTTACAGAGGATACAGGACAGTGACTGGATGATGATGATGGAAACTCAATACTACAT
TTTCAGAGGCCTGAGTTTTGGTGTCAGGGACAACTACAAGTCCAGAACCATGAAAAAGATTGCACAGAAGACTGAAATAT
TAGGGTCAAGTACATCAACCAAAGTAGAAATATTATACAGGAGTACATCTAACCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis