Browse Element(s) Details


OsAffx.30842.1.S1_at

Description tigr:9639.m00576
TID=OsAffx.30842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g064309/11hypothetical protein
LOC_Os08g377001/11RNA recognition motif family protein, expressed
LOC_Os03g376501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g069101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06390Os.9627.1.S1_at11/1111+3074781..3078111Actin-7, putative, expressed
LOC_Os11g06400OsAffx.27522.1.S1_x_at7/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.16187.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_x_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06410Os.7265.1.S1_at11/1111+3087445..3092224expressed protein
LOC_Os11g06410Os.55232.1.S1_at1/1111+3087445..3092224expressed protein
LOC_Os11g06420Os.17428.1.S1_at11/1111+3094367..3098577Tubby protein, putative, expressed
LOC_Os11g06430OsAffx.30842.1.S1_at9/1111+3100925..3102996hypothetical protein
LOC_Os11g06440Os.26735.1.S1_at11/1111+3106479..3108332expressed protein
LOC_Os11g06450OsAffx.30841.1.S1_at11/1111+3108856..3109796hypothetical protein
LOC_Os11g06460OsAffx.7016.1.S1_at11/1111+3112202..3114482Ribosome inactivating protein, expressed
LOC_Os11g06470OsAffx.31174.4.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06470OsAffx.31174.5.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06480OsAffx.30843.1.S1_at11/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.18707.1.S1_at2/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.15945.1.S1_at1/1111+3127729..3130185hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30842.1.S1_at--1114--4091Chr11:3102939..3102963 (25 bp)
CGCATAAAAAATGGCTCGTTAACAA
LOC_Os11g06430
OsAffx.30842.1.S1_at--1153--9371NONE
TCGTTAACAAACATGGGTCTCCCAA
NONE
OsAffx.30842.1.S1_at--69--2111Chr11:3102340..3102360 (21 bp)
ACATGGGTCTCCCAAACCACTGTGG
LOC_Os11g06430
OsAffx.30842.1.S1_at--191--5031Chr11:3102162..3102185 (24 bp)
GCAGTAACCGCGCAGTTATCGGCGC
LOC_Os11g06430
OsAffx.30842.1.S1_at--382--10431NONE
TTATCGGCGCTTCGATTCGCTGTCA
NONE
OsAffx.30842.1.S1_at--145--6571Chr11:3101502..3101526 (25 bp)
GATTCGCTGTCACCGACAACGGAAG
LOC_Os11g06430
OsAffx.30842.1.S1_at--23--2771Chr11:3101374..3101398 (25 bp)
AAGACGGCGGCAACCGTGCAGGCGA
LOC_Os11g06430
OsAffx.30842.1.S1_at--541--7291Chr11:3101052..3101328 (25 bp)
GTGCGTCGGCACCTGTTAAATTATG
LOC_Os11g06430
OsAffx.30842.1.S1_at--310--101140Chr12:26632947..26632967 (21 bp)
TATGGAGTAAAATGCACCAGCGGTC
NONE
OsAffx.30842.1.S1_at--750--7871Chr11:3100990..3101014 (25 bp)
GGTTTTACTTATGTCCACGAATTTG
LOC_Os11g06430
OsAffx.30842.1.S1_at--861--9891Chr11:3100985..3101009 (25 bp)
TACTTATGTCCACGAATTTGCAAAG
LOC_Os11g06430
Target Sequence 
CGCATAAAAAATGGCTCGTTAACAAACATGGGTCTCCCAAACCACTGTGGCCGGGGTTACCGCGTCCCGGCGGAGGTTAC
CGCGGTATTTATATTACCGTACCCCGTGATAAGCCCGGTAACCGCAGTAACCGCGCAGTTATCGGCGCTTCGATTCGCTG
TCACCGACAACGGAAGACGGCAGTGGCAGACGCAGGAGATGGCAGTGGAGGTGGAAGACGGCGGTGGCCGTGCGGCGGGC
GTCGAAGATAGCGGTGGCCGGGCCGCGCTGCAGAGGCGGAAGACGGCGGCAACCGTGCAGGCGAGGGATGACGGGGGCCG
TGCAGCGGATGTGGGAGACAGCGGCGGCTGTGCGTCGGCACCTGTTAAATTATGGAGTAAAATGCACCAGCGGTCCTTAA
ACTTGTCAGGAGGTTTTACTTATGTCCACGAATTTGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis