Browse Element(s) Details


OsAffx.30877.1.S1_at

Description tigr:9639.m00772
TID=OsAffx.30877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0828011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08230OsAffx.8602.1.S1_s_at11/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230OsAffx.8602.1.S1_x_at7/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.46735.1.S1_at4/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08230Os.30575.1.A1_at1/1111+4315098..4321447retrotransposon protein, putative, unclassified
LOC_Os11g08240OsAffx.30875.1.S1_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08240OsAffx.30875.1.S1_x_at11/1111+4321940..4322266hypothetical protein
LOC_Os11g08250OsAffx.18743.1.S1_at11/1111+4323671..4324000hypothetical protein
LOC_Os11g08260OsAffx.30874.1.S1_at11/1111+4325990..4326472hypothetical protein
LOC_Os11g08270OsAffx.18742.1.S1_at9/1111+4330362..4333676hypothetical protein
LOC_Os11g08280OsAffx.30877.1.S1_at11/1111+4338379..4338717hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30877.1.S1_at--361--2851Chr11:4338409..4338433 (25 bp)
AAGTCTTCAGTCTCAACCGCTCTGC
LOC_Os11g08280
OsAffx.30877.1.S1_at--865--8371Chr11:4338495..4338519 (25 bp)
GGCGATCTCCCATCAGCCGAATGAT
LOC_Os11g08280
OsAffx.30877.1.S1_at--655--4311Chr11:4338504..4338528 (25 bp)
CCATCAGCCGAATGATCTTGAGGAC
LOC_Os11g08280
OsAffx.30877.1.S1_at--546--951Chr11:4338524..4338548 (25 bp)
AGGACTTCGCAACGTGCTTCAGAGC
LOC_Os11g08280
OsAffx.30877.1.S1_at--1057--7311Chr11:4338537..4338561 (25 bp)
GTGCTTCAGAGCTAGCAGCTGCTAT
LOC_Os11g08280
OsAffx.30877.1.S1_at--1010--9151Chr11:4338571..4338595 (25 bp)
TGCGCGATAAGGTGCCGTGACCTCG
LOC_Os11g08280
OsAffx.30877.1.S1_at--885--9771Chr11:4338578..4338602 (25 bp)
TAAGGTGCCGTGACCTCGGCTTGAA
LOC_Os11g08280
OsAffx.30877.1.S1_at--59--7391Chr11:4338587..4338611 (25 bp)
GTGACCTCGGCTTGAACCCTGCTGG
LOC_Os11g08280
OsAffx.30877.1.S1_at--242--9111Chr11:4338606..4338630 (25 bp)
TGCTGGCTCCCGCTGCAAGGTCTTG
LOC_Os11g08280
OsAffx.30877.1.S1_at--569--1031Chr11:4338623..4338647 (25 bp)
AGGTCTTGCCCGGTATAGGCCAGTG
LOC_Os11g08280
OsAffx.30877.1.S1_at--29--10191Chr11:4338636..4338660 (25 bp)
TATAGGCCAGTGTTGCTGCTGCGGT
LOC_Os11g08280
Target Sequence 
AAGTCTTCAGTCTCAACCGCTCTGCCGCTGCTGCTGATGTTCCTCCTCCTCGCCACCGCAGCTGCGTCGGCGTCGGCATC
GCCATCGGCGATCTCCCATCAGCCGAATGATCTTGAGGACTTCGCAACGTGCTTCAGAGCTAGCAGCTGCTATGACACGG
GGTGCGCGATAAGGTGCCGTGACCTCGGCTTGAACCCTGCTGGCTCCCGCTGCAAGGTCTTGCCCGGTATAGGCCAGTGT
TGCTGCTGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis