Browse Element(s) Details


OsAffx.30908.1.S1_at

Description tigr:9639.m00925
TID=OsAffx.30908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0980010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09770OsAffx.30907.1.S1_at11/1111+5215865..5217643hypothetical protein
LOC_Os11g09780OsAffx.18768.1.S1_at9/1111+5219300..5220636hypothetical protein
LOC_Os11g09790Os.46306.1.S1_x_at2/1111+5224122..5230334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09800OsAffx.30908.1.S1_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09800OsAffx.30908.1.S1_x_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09810OsAffx.18769.1.S1_at10/1111+5240516..5246459hypothetical protein
LOC_Os11g09810Os.29072.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09810OsAffx.4696.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09820OsAffx.30909.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09820Os.16598.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09830Os.53312.1.S1_at11/1111+5253571..5254967expressed protein
LOC_Os11g09830Os.57200.1.S1_x_at6/1111+5253571..5254967expressed protein
LOC_Os11g09840OsAffx.7053.1.S1_at11/1111+5257617..5258948expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30908.1.S1_at--951--6211NONE
GAGGCCGAAGGCACACATACACACA
NONE
OsAffx.30908.1.S1_at--797--2171Chr11:5238698..5238722 (25 bp)
ACACGCTGCCCGTACACAGAGAAGA
LOC_Os11g09800
OsAffx.30908.1.S1_at--523--3351Chr11:5238699..5238723 (25 bp)
CACGCTGCCCGTACACAGAGAAGAC
LOC_Os11g09800
OsAffx.30908.1.S1_at--1041--1831Chr11:5238700..5238724 (25 bp)
ACGCTGCCCGTACACAGAGAAGACA
LOC_Os11g09800
OsAffx.30908.1.S1_at--1042--4131Chr11:5238701..5238725 (25 bp)
CGCTGCCCGTACACAGAGAAGACAG
LOC_Os11g09800
OsAffx.30908.1.S1_at--957--8111Chr11:5238799..5238823 (25 bp)
GGACGGCGCCCCTGTGCTTGGCGTC
LOC_Os11g09800
OsAffx.30908.1.S1_at--1113--8391Chr11:5238803..5238827 (25 bp)
GGCGCCCCTGTGCTTGGCGTCTCCT
LOC_Os11g09800
OsAffx.30908.1.S1_at--12--3551Chr11:5238829..5238853 (25 bp)
CATCGGTGACGCGTCGGTGTCTTCT
LOC_Os11g09800
OsAffx.30908.1.S1_at--41--511Chr11:5238830..5238854 (25 bp)
ATCGGTGACGCGTCGGTGTCTTCTG
LOC_Os11g09800
OsAffx.30908.1.S1_at--109--7372Chr11:5238834..5238858 (25 bp)
GTGACGCGTCGGTGTCTTCTGCGGC
LOC_Os11g09800
OsAffx.30908.1.S1_at--419--9431Chr11:5238842..5238866 (25 bp)
TCGGTGTCTTCTGCGGCGGACGGCA
LOC_Os11g09800
Target Sequence 
GAGGCCGAAGGCACACATACACACACGCTGCCCGTACACAGAGAAGACAGAGAGGAGGGGAATGGATGAGCGGCTTCTCA
TCGGCGGCGACGACGTGCAGGCGTGCAGCGCGTCTTCTCCGGCGGACGGCGCCCCTGTGCTTGGCGTCTCCTCCATCGGT
GACGCGTCGGTGTCTTCTGCGGCGGACGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis