Browse Element(s) Details


OsAffx.30910.2.S1_at

Description tigr:9639.m00931
TID=OsAffx.30910.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0986011/11hypothetical protein
LOC_Os11g267702/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09830Os.53312.1.S1_at11/1111+5253571..5254967expressed protein
LOC_Os11g09830Os.57200.1.S1_x_at6/1111+5253571..5254967expressed protein
LOC_Os11g09840OsAffx.7053.1.S1_at11/1111+5257617..5258948expressed protein
LOC_Os11g09850Os.53740.1.S1_s_at11/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.27601.1.A1_at10/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.53740.1.S1_at8/1111+5272112..5275433expressed protein
LOC_Os11g09860OsAffx.30910.2.S1_at11/1111+5275960..5276400hypothetical protein
LOC_Os11g09860OsAffx.30910.1.S1_x_at1/1111+5275960..5276400hypothetical protein
LOC_Os11g09870OsAffx.18770.1.S1_s_at11/1111+5280360..5280604hypothetical protein
LOC_Os11g09880NANA11+5285405..5285758hypothetical protein
LOC_Os11g09890OsAffx.30280.1.S1_x_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09890OsAffx.28492.1.S1_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09890OsAffx.27810.1.S1_x_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09900OsAffx.23502.4.S1_at11/1111+5291426..5294636hypothetical protein
LOC_Os11g09910NANA11+5296188..5297351hypothetical protein
LOC_Os11g09919OsAffx.19542.3.S1_x_at7/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919Os.31535.1.A1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919OsAffx.28530.1.S1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30910.2.S1_at--999--5371Chr11:5276340..5276364 (25 bp)
GAAGCAATAGTTGTCTTCAACTCCG
LOC_Os11g09860
OsAffx.30910.2.S1_at--31--1251Chr11:5276332..5276356 (25 bp)
AGTTGTCTTCAACTCCGAGGACAAA
LOC_Os11g09860
OsAffx.30910.2.S1_at--270--2531Chr11:5276322..5276346 (25 bp)
AACTCCGAGGACAAAACAATAACAT
LOC_Os11g09860
OsAffx.30910.2.S1_at--16--2411Chr11:5276309..5276333 (25 bp)
AAACAATAACATGTTCTCGTCACAT
LOC_Os11g09860
OsAffx.30910.2.S1_at--799--8791Chr11:5276298..5276322 (25 bp)
TGTTCTCGTCACATGTATGAATGCA
LOC_Os11g09860
OsAffx.30910.2.S1_at--270--10132Chr11:14831618..14831642 (25 bp)
TATGAATGCATTGGTATGTACAAGC
LOC_Os11g26770
OsAffx.30910.2.S1_at--14--8592Chr11:5276272..5276296 (25 bp)
TGGTATGTACAAGCATTTTTCACAT
LOC_Os11g09860
OsAffx.30910.2.S1_at--1073--8191Chr11:5276111..5276135 (25 bp)
GGAAGGCGACCTCTGTTGCATTGAA
LOC_Os11g09860
OsAffx.30910.2.S1_at--857--891Chr11:5276108..5276132 (25 bp)
AGGCGACCTCTGTTGCATTGAAGTG
LOC_Os11g09860
OsAffx.30910.2.S1_at--565--4291Chr11:5276102..5276126 (25 bp)
CCTCTGTTGCATTGAAGTGCTCAGT
LOC_Os11g09860
OsAffx.30910.2.S1_at--936--871Chr11:5276087..5276111 (25 bp)
AGTGCTCAGTATCAAAAGAACTTCT
LOC_Os11g09860
Target Sequence 
GAAGCAATAGTTGTCTTCAACTCCGAGGACAAAACAATAACATGTTCTCGTCACATGTATGAATGCATTGGTATGTACAA
GCATTTTTCACATAAAAATGAGGTTTTCATCTTGCCAACTCAGTATATACTAAATAGATGGACAAAATATGCAAAAAGAG
ATTTTTATTTTGAGAAGAAACAAATAAGTGACAATGAAACTTTGAGAACACATGCAGCGCGTATCTCTCGGAAGGCGACC
TCTGTTGCATTGAAGTGCTCAGTATCAAAAGAACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30910.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis