Browse Element(s) Details


OsAffx.30920.1.S1_at

Description tigr:9639.m01015
TID=OsAffx.30920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1073011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10710Os.12639.1.A1_at11/1111+5868962..5876181Protein kinase domain containing protein, expressed
LOC_Os11g10720OsAffx.30919.1.S1_at11/1111+5885009..5887312Leucine Rich Repeat family protein
LOC_Os11g10730OsAffx.30920.1.S1_at11/1111+5889307..5889690hypothetical protein
LOC_Os11g10740OsAffx.30921.1.S1_s_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.2.S1_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.1.S1_x_at2/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10750Os.12187.1.S1_at11/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10750Os.13684.1.S1_at2/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10760Os.20557.1.S1_s_at11/1111+5903428..5907411Leucine Rich Repeat family protein, expressed
LOC_Os11g10770Os.51866.1.S1_at11/1111+5907405..5914490NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30920.1.S1_at--1075--4671Chr11:5889628..5889652 (25 bp)
GCGGTCAATTGGTCAAGCATCACAC
LOC_Os11g10730
OsAffx.30920.1.S1_at--1032--7831Chr11:5889562..5889586 (25 bp)
GGTAAAGGCTTGGAAAATTGCTGAT
LOC_Os11g10730
OsAffx.30920.1.S1_at--845--9111Chr11:5889544..5889568 (25 bp)
TGCTGATGATCGTGTGATGGGATTC
LOC_Os11g10730
OsAffx.30920.1.S1_at--729--9591Chr11:5889521..5889545 (25 bp)
TCATATTTATGAGCGTTGATGTGGC
LOC_Os11g10730
OsAffx.30920.1.S1_at--761--8871Chr11:5889505..5889529 (25 bp)
TGATGTGGCTATTCGGATAGGTTTT
LOC_Os11g10730
OsAffx.30920.1.S1_at--343--6491Chr11:5889490..5889514 (25 bp)
GATAGGTTTTAAGGCTCACACAAGT
LOC_Os11g10730
OsAffx.30920.1.S1_at--827--4831Chr11:5889477..5889501 (25 bp)
GCTCACACAAGTGCTAAGGAGATGT
LOC_Os11g10730
OsAffx.30920.1.S1_at--652--6251Chr11:5889457..5889481 (25 bp)
GATGTGGAACTATCTCAAACAGAGA
LOC_Os11g10730
OsAffx.30920.1.S1_at--207--3731Chr11:5889428..5889452 (25 bp)
CTCAAGAAAGTGGAGCCTTACGCTT
LOC_Os11g10730
OsAffx.30920.1.S1_at--734--4311Chr11:5889413..5889437 (25 bp)
CCTTACGCTTCTCCTTGTTGCAAAA
LOC_Os11g10730
OsAffx.30920.1.S1_at--1140--5131Chr11:5889394..5889418 (25 bp)
GCAAAATCTGAACAACTTACAGCAG
LOC_Os11g10730
Target Sequence 
GCGGTCAATTGGTCAAGCATCACACCTCACAGATGATCCTCCTGATGAGAAAACAGATGCAACAAAGGTAAAGGCTTGGA
AAATTGCTGATGATCGTGTGATGGGATTCATATTTATGAGCGTTGATGTGGCTATTCGGATAGGTTTTAAGGCTCACACA
AGTGCTAAGGAGATGTGGAACTATCTCAAACAGAGATACACTCAAGAAAGTGGAGCCTTACGCTTCTCCTTGTTGCAAAA
TCTGAACAACTTACAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis