Browse Element(s) Details


OsAffx.30954.1.S1_at

Description tigr:9639.m01244
TID=OsAffx.30954.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serpin (serine protease inhibitor)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1354011/11Serpin family protein, expressed
LOC_Os11g1353011/11Serpin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13510OsAffx.18829.1.S1_at11/1111+7400305..7403674NB-ARC domain containing protein
LOC_Os11g13520OsAffx.30952.1.S1_at11/1111+7405681..7408698hypothetical protein
LOC_Os11g13530OsAffx.30954.1.S1_at11/1111+7415097..7416470Serpin family protein
LOC_Os11g13540OsAffx.30954.1.S1_at11/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13540OsAffx.30954.2.S1_x_at1/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13550NANA11+7427808..7428296hypothetical protein
LOC_Os11g13560OsAffx.30954.2.S1_x_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13560OsAffx.30954.2.S1_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13570Os.6098.1.A1_at10/1111+7433174..7434610PrMC3, putative, expressed
LOC_Os11g13580NANA11+7437492..7437719hypothetical protein
LOC_Os11g13590OsAffx.7104.1.S1_at11/1111+7439363..7439659expressed protein
LOC_Os11g13600NANA11+7442044..7448041retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.5.S1_x_at5/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.2.S1_x_at3/1111+7448890..7452093retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30954.1.S1_at--550--7272Chr11:7424078..7424102 (25 bp)
GTGCCGAGGTTCAAGGTGTCGTTCT
LOC_Os11g13540
OsAffx.30954.1.S1_at--837--9172Chr11:7424077..7424101 (25 bp)
TGCCGAGGTTCAAGGTGTCGTTCTA
LOC_Os11g13540
OsAffx.30954.1.S1_at--1073--4492Chr11:7424076..7424100 (25 bp)
GCCGAGGTTCAAGGTGTCGTTCTAC
LOC_Os11g13540
OsAffx.30954.1.S1_at--436--4232Chr11:7424075..7424099 (25 bp)
CCGAGGTTCAAGGTGTCGTTCTACA
LOC_Os11g13540
OsAffx.30954.1.S1_at--453--4052Chr11:7424074..7424098 (25 bp)
CGAGGTTCAAGGTGTCGTTCTACAG
LOC_Os11g13540
OsAffx.30954.1.S1_at--902--6152Chr11:7424073..7424097 (25 bp)
GAGGTTCAAGGTGTCGTTCTACAGC
LOC_Os11g13540
OsAffx.30954.1.S1_at--1129--7972Chr11:7423827..7423851 (25 bp)
GGACCATCCGTTCGCGTTCTTCGTG
LOC_Os11g13540
OsAffx.30954.1.S1_at--842--4332Chr11:7423824..7423848 (25 bp)
CCATCCGTTCGCGTTCTTCGTGGTG
LOC_Os11g13540
OsAffx.30954.1.S1_at--815--3512Chr11:7423823..7423847 (25 bp)
CATCCGTTCGCGTTCTTCGTGGTGG
LOC_Os11g13540
OsAffx.30954.1.S1_at--404--552Chr11:7423822..7423846 (25 bp)
ATCCGTTCGCGTTCTTCGTGGTGGA
LOC_Os11g13540
OsAffx.30954.1.S1_at--954--4232Chr11:7423820..7423844 (25 bp)
CCGTTCGCGTTCTTCGTGGTGGAGG
LOC_Os11g13540
Target Sequence 
GTGCCGAGGTTCAAGGTGTCGTTCTACAGCNAGATNAACGNGGTTCTGNAGGGGATGGGGNTNNNGGCCGCCTTCGACGN
CGGCNAGGNCGACCTNTCCGGCATGNNNGANGGCGNNNNNNAGCNGGNNNNNNNNNTGGTGGTGGAGNAGGTGNTNCACA
GGGCGGTCGTGGAGGTGAACGAGGAAGGCACGGAGGCGGCGGCGNCCACGGCCTGCACGATNANGNTCTTGNGNNTNANN
TNNACCNNNNCNGNGGACTTCGTCGCGGACCATCCGTTCGCGTTCTTCGTGGTGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis