Browse Element(s) Details


OsAffx.30966.3.A1_x_at

Description tigr:9635.m04598
TID=OsAffx.30966.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4575011/11AT hook motif-containing protein, putative, expressed
LOC_Os11g4092011/11AT hook motif-containing protein, putative
LOC_Os08g2445011/11AT hook motif-containing protein, putative
LOC_Os11g1392011/11AT hook motif-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45700NANA7+27281295..27284925retrotransposon protein, putative, unclassified
LOC_Os07g45710NANA7+27288618..27291342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45720Os.2358.1.S1_at2/117+27294189..27296987retrotransposon protein, putative, unclassified
LOC_Os07g45730NANA7+27298397..27299092hypothetical protein
LOC_Os07g45740OsAffx.14221.1.S1_x_at5/117+27306234..27307832hypothetical protein
LOC_Os07g45750OsAffx.30966.3.A1_x_at11/117+27308024..27314863AT hook motif-containing protein, putative, expressed
LOC_Os07g45760OsAffx.30966.4.S1_at1/117+27316342..27319173hypothetical protein
LOC_Os07g45760OsAffx.30966.4.S1_x_at1/117+27316342..27319173hypothetical protein
LOC_Os07g45770Os.2987.3.S1_x_at1/117+27323005..27324904retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45780OsAffx.28924.1.S1_at11/117+27328621..27331805expressed protein
LOC_Os07g45790OsAffx.16726.1.S1_at10/117+27332547..27334517expressed protein
LOC_Os07g45800NANA7+27335904..27336224hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30966.3.A1_x_at--689--2014Chr08:14641789..14641813 (25 bp)
ACTCAGGCCCAAGTTATTGTCTTTG
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--366--9874Chr08:14641936..14641960 (25 bp)
TACAGTGACTGGTAGTTCGCCGTGC
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--333--10634Chr08:14641951..14641975 (25 bp)
TTCGCCGTGCAAATGGTATCTAAAC
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--555--2374Chr08:14641972..14641996 (25 bp)
AAACCTTGATATTCCTGAAGTGCTA
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--276--5914Chr08:14642112..14642135 (24 bp)
GAGCTTCAGTGCAAACTTTCGTCCA
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--66--3494Chr08:14642326..14642347 (22 bp)
CAGGAGTACACGTTTCATTGTCAAT
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--264--94Chr08:14642376..14642400 (25 bp)
ATTCCTGGTGGTACAATTCATGCCG
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--129--2514Chr08:14642413..14642437 (25 bp)
AACTTCTAAGCCATACGGTTCTAGC
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--948--9834Chr08:14642571..14642595 (25 bp)
TAAAGTAGTGCTCATCGCCGGTGAT
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--518--594Chr08:14642594..14642618 (25 bp)
ATGCCAGCTCCAATGCTACATTTAT
LOC_Os08g24450
OsAffx.30966.3.A1_x_at--1110--10334Chr08:14642621..14642645 (25 bp)
TTTTTGGAAGAGTTGCACACCGCCT
LOC_Os08g24450
Target Sequence 
ACTCAGGCCCAAGTTATTGTCTTTGTTGGGACACTTGTCAAAGATTACACAGGATTAGGTCTTACAGTGACTGGTAGTTC
GCCGTGCAAATGGTATCTAAACCTTGATATTCCTGAAGTGCTAGAACTCAAAGAGAGCTTCAGTGCAAACTTTCGTCCAG
TGAGCTGGGTTGATAACCCAGCAACAGGTTACAACCAGGACACTGCAGAGGAAAAAACTATTCAAGAAATACTTGCCCTC
AATCCTCACAAGAACAGGAGTACACGTTTCATTGTCAATGTCACTGTTAGGAGGATATGCAGCGAAAATTCCTGGTGGTA
CAATTCATGCCGATTATGCTATAGAACTTCTAAGCCATACGGTTCTAGCTACAAATGCTCAAGCTGTTCTAACATAGGAA
TACCAGATCCAAGATATAAAGTAGTGCTCATCGCCGGTGATGCCAGCTCCAATGCTACATTTATCCTTTTTGGAAGAGTT
GCACACCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30966.3.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis