Browse Element(s) Details


OsAffx.31200.1.S1_at

Description tigr:9639.m02660
TID=OsAffx.31200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2943010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29400Os.15877.1.S1_at11/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29400OsAffx.3069.1.S1_at1/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29410OsAffx.19067.1.S1_at9/1111+16572053..16576363hypothetical protein
LOC_Os11g29410OsAffx.21120.1.S1_x_at1/1111+16572053..16576363hypothetical protein
LOC_Os11g29420OsAffx.19068.1.S1_x_at11/1111+16577495..16578663Protease inhibitor/seed storage/LTP family protein
LOC_Os11g29430OsAffx.31200.1.S1_at10/1111+16585193..16586282hypothetical protein
LOC_Os11g29440NANA11+16587250..16588695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29450OsAffx.20565.1.S1_at1/1111+16589821..16592736retrotransposon protein, putative, unclassified
LOC_Os11g29470Os.15237.1.S1_at1/1111+16595388..16597465expressed protein
LOC_Os11g29460OsAffx.31201.1.S1_at11/1111+16597398..16598142NA
LOC_Os11g29480OsAffx.7248.1.S1_at10/1111+16602640..16604041hypothetical protein
LOC_Os11g29490Os.52639.1.S1_at11/1111+16606016..16611363E1-E2 ATPase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31200.1.S1_at--269--8351Chr11:16586139..16586163 (25 bp)
GGCGGTCACACTCTTCACTGCTGGT
LOC_Os11g29430
OsAffx.31200.1.S1_at--113--2731Chr11:16586094..16586118 (25 bp)
AAGCAGAGGCACTCCTTCCGTGGCG
LOC_Os11g29430
OsAffx.31200.1.S1_at--17--4691NONE
GCGGCAGGCACGGTAATCCTAACTC
NONE
OsAffx.31200.1.S1_at--1039--7831Chr11:16585626..16585650 (25 bp)
GGCTTACCCCGCTGGATCGGCCGAG
LOC_Os11g29430
OsAffx.31200.1.S1_at--1055--3691Chr11:16585615..16585639 (25 bp)
CTGGATCGGCCGAGGCTCCTAACCA
LOC_Os11g29430
OsAffx.31200.1.S1_at--1038--6191Chr11:16585604..16585628 (25 bp)
GAGGCTCCTAACCACTCCATCAATG
LOC_Os11g29430
OsAffx.31200.1.S1_at--673--1391Chr11:16585480..16585504 (25 bp)
AGACGCGCCGCCTCAGGGAGACCAT
LOC_Os11g29430
OsAffx.31200.1.S1_at--1069--1031Chr11:16585466..16585490 (25 bp)
AGGGAGACCATACACCGACGAGATC
LOC_Os11g29430
OsAffx.31200.1.S1_at--517--4931Chr11:16585314..16585338 (25 bp)
GCTTGATGAAACTGCCGCCACTCGA
LOC_Os11g29430
OsAffx.31200.1.S1_at--928--7151Chr11:16585262..16585286 (25 bp)
GTCTACTCCAAGCACGGCTGCGATG
LOC_Os11g29430
OsAffx.31200.1.S1_at--387--2731Chr11:16585253..16585277 (25 bp)
AAGCACGGCTGCGATGCGGCCTCGT
LOC_Os11g29430
Target Sequence 
GGCGGTCACACTCTTCACTGCTGGTCTCCCATCCCGCCGCCGACGAAGCAGAGGCACTCCTTCCGTGGCGGCGGCAGGCA
CGGTAATCCTAACTCCTCCCCATCTCCGGCGGCTTACCCCGCTGGATCGGCCGAGGCTCCTAACCACTCCATCAATGCCA
TCCACAGCCGCCCACTGGCTGTCCTCGAGGGCTCGTGCACGCCGGGCTGGAGCTCATGCTGCGGCGGCGGCGGCGTGCCT
TGGGCAGAGGACGAGGAGACGCGCCGCCTCAGGGAGACCATACACCGACGAGATCCTGCAGTACATGGGCAGGTCGTGCA
AGCAGGAGCACGAGCTCACCTCGCCGCAGGCCAGCGGCGGCGGCAGCAGCAGGCCGGCGTCAAGGTATCTCCGGCCAATC
GACATCGTGCTCGACGGCCACGGCTTGATGAAACTGCCGCCACTCGAGAGCCCGTCGGCGGCCACAACGCTCTCGTCTAC
TCCAAGCACGGCTGCGATGCGGCCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis