Browse Element(s) Details


OsAffx.31295.1.S1_at

Description tigr:9639.m03098
TID=OsAffx.31295.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=galactomannan galactosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3439011/11Glycosyltransferase 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os11g34360Os.7038.1.S1_at11/1111+19634956..19639326Lung seven transmembrane receptor family protein, expressed
LOC_Os11g34370Os.50588.1.S1_at11/1111+19643320..19646664patatin, putative, expressed
LOC_Os11g34380OsAffx.19153.1.S1_at11/1111+19647096..19647845hypothetical protein
LOC_Os11g34390OsAffx.31295.1.S1_at11/1111+19651224..19652722Glycosyltransferase 6, putative, expressed
LOC_Os11g34400Os.47130.4.A1_x_at1/1111+19655918..19656244retrotransposon protein, putative, unclassified
LOC_Os11g34410NANA11+19657235..19662874retrotransposon protein, putative, unclassified
LOC_Os11g34420Os.28943.1.S1_x_at2/1111+19663496..19666719retrotransposon protein, putative, unclassified
LOC_Os11g34430Os.47130.4.A1_x_at1/1111+19667659..19667985retrotransposon protein, putative, unclassified
LOC_Os11g34440OsAffx.31296.1.S1_at11/1111+19673520..19675027phospholipase A2, putative, expressed
LOC_Os11g34450Os.9221.1.S1_at8/1111+19677133..1968031114-3-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31295.1.S1_at--1145--8191Chr11:19651717..19651741 (25 bp)
GGAAGTCCGACAAGGAGTCCGACGA
LOC_Os11g34390
OsAffx.31295.1.S1_at--532--3771Chr11:19651670..19651694 (25 bp)
CTCTCCGAGCACGAGGAGAAATGGG
LOC_Os11g34390
OsAffx.31295.1.S1_at--502--7551Chr11:19651645..19651669 (25 bp)
GGGCCAAGACCTACCTCGAGAAGGG
LOC_Os11g34390
OsAffx.31295.1.S1_at--972--4351Chr11:19651642..19651666 (25 bp)
CCAAGACCTACCTCGAGAAGGGCTA
LOC_Os11g34390
OsAffx.31295.1.S1_at--512--8351Chr11:19651367..19651391 (25 bp)
GGCGGCGAGCCGAACAAGATCTACT
LOC_Os11g34390
OsAffx.31295.1.S1_at--31--8391Chr11:19651364..19651388 (25 bp)
GGCGAGCCGAACAAGATCTACTCCA
LOC_Os11g34390
OsAffx.31295.1.S1_at--133--4071Chr11:19651362..19651386 (25 bp)
CGAGCCGAACAAGATCTACTCCAAG
LOC_Os11g34390
OsAffx.31295.1.S1_at--879--2771Chr11:19651337..19651361 (25 bp)
AAGAGCTGCGCCGACGGGATGAACC
LOC_Os11g34390
OsAffx.31295.1.S1_at--861--7651Chr11:19651322..19651346 (25 bp)
GGGATGAACCGCGCGCTCAACTTCG
LOC_Os11g34390
OsAffx.31295.1.S1_at--749--8631Chr11:19651285..19651309 (25 bp)
TGCTCCGGAACTACGGGTACCGCCA
LOC_Os11g34390
OsAffx.31295.1.S1_at--444--3291Chr11:19651262..19651286 (25 bp)
CACAAGGACCCGCTCTCCGACGAGG
LOC_Os11g34390
Target Sequence 
GGAAGTCCGACAAGGAGTCCGACGACCAGTCGGCGCTCGTCTACCTCCTCTCCGAGCACGAGGAGAAATGGGGGGCCAAG
ACCTACCTCGAGAAGGGCTACTTCTTCCAGGGGTACTGGGTGGAGGTCGTCGACCGGCTCGACGACATCGCGGCGAGGTA
CGAGGCGGCGGAGCGGCGGCCCTCGGCGGGGGCGGCGCATCTCCGCCGGCGGCACGCGGAGGGGGAGCACGAGCGGTACG
CGGCGGCGAGGAACGCGGCGGTGAGGGGCGCCGTCCCGGGCCCCGCCGGCGGCGGGCAGAGCGGGTGGCGGCGGCCGTTC
GTGACGCACTTCACCGGGTGCCAGCCGTGCGGCGGCGAGCCGAACAAGATCTACTCCAAGAAGAGCTGCGCCGACGGGAT
GAACCGCGCGCTCAACTTCGCCGACGACCAGGTGCTCCGGAACTACGGGTACCGCCACAAGGACCCGCTCTCCGACGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis