Browse Element(s) Details


OsAffx.31329.1.S1_at

Description tigr:9639.m03313
TID=OsAffx.31329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3669011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36670OsAffx.19198.1.S1_at11/1111+21147686..21149007hypothetical protein
LOC_Os11g36670OsAffx.19197.1.S1_at2/1111+21147686..21149007hypothetical protein
LOC_Os11g36690OsAffx.31329.1.S1_at11/1111+21164045..21165849hypothetical protein
LOC_Os11g36700NANA11+21170341..21171655glycosyltransferase, putative
LOC_Os11g36719Os.6031.1.S1_at10/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_x_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719Os.52574.2.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.20020.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.5809.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36740OsAffx.31331.1.S1_at10/1111+21186130..21189758expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31329.1.S1_at--354--1171Chr11:21164107..21164131 (25 bp)
AGTCAAGATTCTGCGCTGGACGGAA
LOC_Os11g36690
OsAffx.31329.1.S1_at--519--8911Chr11:21164170..21164194 (25 bp)
TGAGAAGATTCTTGGCGCCGCAGCA
LOC_Os11g36690
OsAffx.31329.1.S1_at--922--9651Chr11:21164229..21164253 (25 bp)
TCACCCTCGGTGAGGTTTTCTTGGA
LOC_Os11g36690
OsAffx.31329.1.S1_at--147--6311Chr11:21164317..21164341 (25 bp)
GATGAGGTCATCTTCAAACAGAGCA
LOC_Os11g36690
OsAffx.31329.1.S1_at--471--10671Chr11:21164412..21164436 (25 bp)
TTCCTCGACATGCTTCTTGTTCTTG
LOC_Os11g36690
OsAffx.31329.1.S1_at--897--871Chr11:21164455..21164479 (25 bp)
ATGGCCGTCGAACGATGGGTTCTTT
LOC_Os11g36690
OsAffx.31329.1.S1_at--981--10751Chr11:21164478..21164502 (25 bp)
TTGAGCAGCTCGTGAACGCGGCGAA
LOC_Os11g36690
OsAffx.31329.1.S1_at--1075--4551Chr11:21165439..21165460 (22 bp)
GCGCCAGATATAACGCGTTCCTCAA
LOC_Os11g36690
OsAffx.31329.1.S1_at--767--3131Chr11:21165460..21165484 (25 bp)
AATTACAATACCGTGCACCCGAGAT
LOC_Os11g36690
OsAffx.31329.1.S1_at--172--1291Chr11:21165724..21165743 (20 bp)
AGATCCCATGGGAGATGTACACGCT
LOC_Os11g36690
OsAffx.31329.1.S1_at--914--6271Chr11:21165732..21165756 (25 bp)
GATGTACACGCTGGACACGACGATT
LOC_Os11g36690
Target Sequence 
AGTCAAGATTCTGCGCTGGACGGAAGGAGGCGGCCGGGGACGCGTCGGCAAGGTTTTCTTGGATGAGAAGATTCTTGGCG
CCGCAGCAGCAGGAGGAGGCCGGGGGCCCGGGCGCGGGCCTGTCACCCTCGGTGAGGTTTTCTTGGAGGAGAAGGTTCTT
GGCGCAGCAGTAGCAGGAGGAGGGGCCGGGGGCGCGGGCACTTCGCCGTCGATGAGGTCATCTTCAAACAGAGCATTCAT
GGAGGACTCAAGGGTCAAGGCCAGGAGAAGGGAAGCCATGGAGCGGATCGGGCTGGCTCCGCGTCTTCCTCGACATGCTT
CTTGTTCTTGTTCTTGGAGCCTCTCGCCATGGCCGTCGAACGATGGGTTCTTTGAGCAGCTCGTGAACGCGGCGAAGCTA
GACGAGGGTGTAGTAGCCGGCGACAGCGCCAGATATAACGCGTTCCTCAAATTACAATACCGTGCACCCGAGATCCCATG
GGAGATGTACACGCTGGACACGACGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis