Browse Element(s) Details


OsAffx.31358.1.S1_at

Description tigr:9639.m03445
TID=OsAffx.31358.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3799011/11CRS1/YhbY domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37940OsAffx.7332.1.S1_at10/1111+21997840..21998927Wound-induced protein WIN2 precursor, putative, expressed
LOC_Os11g37944NANA11+21999209..21999871hypothetical protein
LOC_Os11g37950Os.20230.1.S1_at10/1111+22000685..22001753Barwin, putative, expressed
LOC_Os11g37960OsAffx.19224.1.S1_at11/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37960Os.20289.1.S1_at8/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37990OsAffx.31358.1.S1_at11/1111+22022254..22028270CRS1/YhbY domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S2_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S1_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38010Os.9681.1.S1_at11/1111+22049000..22053566Targeting protein for Xklp2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31358.1.S1_at--797--5391Chr11:22022906..22023010 (25 bp)
GAAGCTCAAAGCAGAACTGCTCCAA
LOC_Os11g37990
OsAffx.31358.1.S1_at--118--6651Chr11:22022849..22022873 (25 bp)
GTTGTATGCCAAACTTGATTCTGCT
LOC_Os11g37990
OsAffx.31358.1.S1_at--946--6571Chr11:22022833..22022857 (25 bp)
GATTCTGCTTATTCCAGTGACGAGG
LOC_Os11g37990
OsAffx.31358.1.S1_at--299--891Chr11:22022687..22022711 (25 bp)
AGGCCTACCTCAGGAGTTTCGACAA
LOC_Os11g37990
OsAffx.31358.1.S1_at--64--6851Chr11:22022672..22022696 (25 bp)
GTTTCGACAATTCGGTAGCTGTCCA
LOC_Os11g37990
OsAffx.31358.1.S1_at--468--10591Chr11:22022662..22022686 (25 bp)
TTCGGTAGCTGTCCAGAACGGTGAT
LOC_Os11g37990
OsAffx.31358.1.S1_at--957--5451Chr11:22022647..22022671 (25 bp)
GAACGGTGATGATCGAACCTCCCTT
LOC_Os11g37990
OsAffx.31358.1.S1_at--889--711Chr11:22022639..22022663 (25 bp)
ATGATCGAACCTCCCTTGATGGCAG
LOC_Os11g37990
OsAffx.31358.1.S1_at--520--10771Chr11:22022624..22022648 (25 bp)
TTGATGGCAGCGACGCCAATTCTGA
LOC_Os11g37990
OsAffx.31358.1.S1_at--530--5811Chr11:22022613..22022637 (25 bp)
GACGCCAATTCTGACGACGAGGGTG
LOC_Os11g37990
OsAffx.31358.1.S1_at--899--1871Chr11:22022597..22022621 (25 bp)
ACGAGGGTGACTACTCTGACGAGGA
LOC_Os11g37990
Target Sequence 
GAAGCTCAAAGCAGAACTGCTCCAAATGGAAGGGGTGAAAGAGGAAGGAGATGTGGAGTTGTATGCCAAACTTGATTCTG
CTTATTCCAGTGACGAGGAAGATGTGGAGGATGAGGATGATGAGGCCTACCTCAGGAGTTTCGACAATTCGGTAGCTGTC
CAGAACGGTGATGATCGAACCTCCCTTGATGGCAGCGACGCCAATTCTGACGACGAGGGTGACTACTCTGACGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis