Browse Element(s) Details


OsAffx.3140.1.S1_at

Description tigr:9631.m00468
TID=OsAffx.3140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0545011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed
LOC_Os03g05480Os.25045.1.S1_at11/113+2692428..2695029Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05490OsAffx.12739.1.S1_at11/113+2696842..2697438hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3140.1.S1_at--250--6151Chr03:2675171..2675195 (25 bp)
GAGGTGGACCAATGTGCTGCGCACT
LOC_Os03g05450
OsAffx.3140.1.S1_at--774--5031Chr03:2675151..2675175 (25 bp)
GCACTGGATCGGTGGCGGCCAAATT
LOC_Os03g05450
OsAffx.3140.1.S1_at--928--3911Chr03:2675136..2675160 (25 bp)
CGGCCAAATTCGTGGCTGTGGATTT
LOC_Os03g05450
OsAffx.3140.1.S1_at--705--10851Chr03:2675112..2675136 (25 bp)
TTGGCACTCTCATGTTCACCATGGA
LOC_Os03g05450
OsAffx.3140.1.S1_at--430--8791Chr03:2675100..2675124 (25 bp)
TGTTCACCATGGACACAGGGCAGGA
LOC_Os03g05450
OsAffx.3140.1.S1_at--370--2131Chr03:2675090..2675110 (21 bp)
ACAGGGCAGGACATTCTTGAGAGCA
LOC_Os03g05450
OsAffx.3140.1.S1_at--587--2771Chr03:2674844..2674868 (25 bp)
AAGAGTTTATTTTGAGCCAACCAGA
LOC_Os03g05450
OsAffx.3140.1.S1_at--406--4391Chr03:2674829..2674853 (25 bp)
GCCAACCAGAGGCTTACGAGTTTAA
LOC_Os03g05450
OsAffx.3140.1.S1_at--557--2691Chr03:2674793..2674817 (25 bp)
AAGCTTTCAGAAGGCCAGGAGACCC
LOC_Os03g05450
OsAffx.3140.1.S1_at--776--5991Chr03:2674775..2674799 (25 bp)
GAGACCCACCTCTTGATGAAGTTGT
LOC_Os03g05450
OsAffx.3140.1.S1_at--358--6091Chr03:2674729..2674753 (25 bp)
GAGTACTATGCTCAGCCAAGATCCT
LOC_Os03g05450
Target Sequence 
GAGGTGGACCAATGTGCTGCGCACTGGATCGGTGGCGGCCAAATTCGTGGCTGTGGATTTTGGCACTCTCATGTTCACCA
TGGACACAGGGCAGGACATTCTTGAGAGCAGTGATAATTGGGTGACACTGTTTAAGGTGAAAGAGTTTATTTTGAGCCAA
CCAGAGGCTTACGAGTTTAAGATTGGGAATCAAGCTTTCAGAAGGCCAGGAGACCCACCTCTTGATGAAGTTGTCGAGAT
GCTACAGAAACAGAAGAGTACTATGCTCAGCCAAGATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis