Browse Element(s) Details


OsAffx.31404.1.S1_at

Description tigr:9639.m03695
TID=OsAffx.31404.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4038011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40340OsAffx.19273.1.S1_at11/1111+23545075..23548802expressed protein
LOC_Os11g40350OsAffx.31402.1.S1_at11/1111+23552451..23552765hypothetical protein
LOC_Os11g40360OsAffx.424.1.S1_at8/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40360OsAffx.7176.1.S1_at1/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40370OsAffx.31403.1.S1_at11/1111+23565758..23567587Protein kinase domain containing protein, expressed
LOC_Os11g40380OsAffx.31404.1.S1_at11/1111+23570270..23574297Protein kinase domain containing protein, expressed
LOC_Os11g40390Os.52589.1.S1_at11/1111+23576391..23580832expressed protein
LOC_Os11g40400OsAffx.19274.1.S1_at11/1111+23583292..23585169expressed protein
LOC_Os11g40410OsAffx.31405.1.S1_at11/1111+23588078..23590550expressed protein
LOC_Os11g40420OsAffx.31405.2.S1_at11/1111+23594940..23597170expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31404.1.S1_at--683--3771Chr11:23570841..23570865 (25 bp)
CTCTCGATTACCTCCACAGAAATAA
LOC_Os11g40380
OsAffx.31404.1.S1_at--849--9751Chr11:23570819..23570843 (25 bp)
TAATCACAAGCCAATCATTCACGGT
LOC_Os11g40380
OsAffx.31404.1.S1_at--216--2391Chr11:23570780..23570804 (25 bp)
AAACGTCCACTTCACTGCAGATAAT
LOC_Os11g40380
OsAffx.31404.1.S1_at--652--8211Chr11:23570734..23570758 (25 bp)
GGAATTTCCACTCTGTTACATCCAA
LOC_Os11g40380
OsAffx.31404.1.S1_at--773--2411Chr11:23570708..23570732 (25 bp)
AAAACATGTACCATCCGCCATTGAG
LOC_Os11g40380
OsAffx.31404.1.S1_at--688--10131Chr11:23570651..23570675 (25 bp)
TATTCAGGGAATCTTTCGGACTTTC
LOC_Os11g40380
OsAffx.31404.1.S1_at--323--10171Chr11:23570586..23570610 (25 bp)
TATCAGCTCTGGGTATCATACTACT
LOC_Os11g40380
OsAffx.31404.1.S1_at--307--7591Chr11:23570375..23570399 (25 bp)
GGGCTTGAGATTCAGTGATCCAGCA
LOC_Os11g40380
OsAffx.31404.1.S1_at--618--5531Chr11:23570348..23570372 (25 bp)
GAAACAGTGTCCTCAATTAGCCAGT
LOC_Os11g40380
OsAffx.31404.1.S1_at--887--1691Chr11:23570330..23570354 (25 bp)
AGCCAGTGAAGTGCTGCCTCAGATT
LOC_Os11g40380
OsAffx.31404.1.S1_at--967--6311Chr11:23570300..23570324 (25 bp)
GATGCATAGTACGACTTACTCTCAG
LOC_Os11g40380
Target Sequence 
CTCTCGATTACCTCCACAGAAATAATCACAAGCCAATCATTCACGGTGACCTTAAACCAAGAAACGTCCACTTCACTGCA
GATAATATATGCAAGCTCAGAAACTTTGGAATTTCCACTCTGTTACATCCAACAAAACATGTACCATCCGCCATTGAGGA
AGTTATTCAGGGAATGCCCGGTGAAAAAGTTATTCAGGGAATCTTTCGGACTTTCATGGACATTGATGACTGCAAGATTC
AGATTCAGACAGATGTATCAGCTCTGGGTATCATACTACTTCAGCTAGTTACAGGGCATTCAGATGCAAAGAGTCTGAGA
GATTTTGTGGCACAGAAACTGGGAGATGATAGTGAATTCCAAAGGAAGAGCATTCTGCAGAAGAGAGAAATCCTGAAAGG
GATTGTGGATCCTGAGCTGAAAAGGTGTCAAACACCAGTGGAAGGTGCAGCTAGGATGCTGTTCTTGGGCTTGAGATTCA
GTGATCCAGCAGGGAAACAGTGTCCTCAATTAGCCAGTGAAGTGCTGCCTCAGATTCAATCGATGCATAGTACGACTTAC
TCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis