Browse Element(s) Details


OsAffx.31415.1.S1_at

Description tigr:9636.m02396
TID=OsAffx.31415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24420Os.8780.1.S1_at11/118+14619766..14626792expressed protein
LOC_Os08g24420Os.8780.1.S2_at11/118+14619766..14626792expressed protein
LOC_Os08g24434Os.54383.1.S1_at11/118+14627447..14633423expressed protein
LOC_Os08g24450OsAffx.30966.3.A1_x_at11/118+14635916..14643574AT hook motif-containing protein, putative
LOC_Os08g24460OsAffx.19287.2.S1_s_at11/118+14644658..14646629hypothetical protein
LOC_Os08g24470OsAffx.31415.1.S1_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24470OsAffx.31415.2.S1_s_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24480OsAffx.29329.2.S1_x_at11/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_x_at5/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_at1/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24490OsAffx.8980.1.S1_at3/118+14661120..14662622retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24500Os.27639.1.S1_x_at3/118+14663513..14665285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24510OsAffx.17130.1.S1_at11/118+14670359..14670574hypothetical protein
LOC_Os08g24520NANA8+14673807..14676712transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31415.1.S1_at--1027--2851Chr08:14649014..14649038 (25 bp)
AAGTGACGCTCACAATGTGCGCACA
LOC_Os08g24470
OsAffx.31415.1.S1_at--766--9611Chr08:14649391..14649536 (25 bp)
TCATCGCCGCTGGAGGCTATTAGTG
LOC_Os08g24470
OsAffx.31415.1.S1_at--966--231Chr08:14649546..14649570 (25 bp)
ATATATGGTGGCTTGCGGCATCGAG
LOC_Os08g24470
OsAffx.31415.1.S1_at--486--10771Chr08:14649615..14649639 (25 bp)
TTGATGGCAACAACTCTCCTTTCCT
LOC_Os08g24470
OsAffx.31415.1.S1_at--1034--7311Chr08:14649642..14649666 (25 bp)
GTGCTCGGTCACCAACGATAGGCAA
LOC_Os08g24470
OsAffx.31415.1.S1_at--504--8611Chr08:14649670..14649694 (25 bp)
TGGTGCGGACCAGCCATATCTAATG
LOC_Os08g24470
OsAffx.31415.1.S1_at--89--10831Chr08:14649696..14649720 (25 bp)
TTGGAAAGCCTCACGGTTGGCCCTG
LOC_Os08g24470
OsAffx.31415.1.S1_at--443--4871Chr08:14649748..14649772 (25 bp)
GCTATGGTGCCAGTCGAAGAACAGT
LOC_Os08g24470
OsAffx.31415.1.S1_at--744--8651Chr08:14649923..14649947 (25 bp)
TGGGCTGCCCAGCAAAGAGCTAGCA
LOC_Os08g24470
OsAffx.31415.1.S1_at--210--5911Chr08:14649939..14649963 (25 bp)
GAGCTAGCAGGCATGATAGGTCCAT
LOC_Os08g24470
OsAffx.31415.1.S1_at--744--271Chr08:14649954..14649978 (25 bp)
ATAGGTCCATATGCTAGCGGAGACT
LOC_Os08g24470
Target Sequence 
AAGTGACGCTCACAATGTGCGCACACTCACCCTACCCCTATGAGTACCTCCGAAAGACTGAGCTGGCATGTCGTGAGATT
GACGAAGTCACCACAGGCGCCTCGCTGTCGACGAATATCCTCCCTCCTTACACCTCATCGCCGCTGGAGGCTATTAGTGG
TGGGGAGGATATATGGTGGCTTGCGGCATCGAGGATGGGTTGGAGAGGAGATGTGGCTGCGGTGCAGGCCGATAGCGTTG
ATGGCAACAACTCTCCTTTCCTTTGTGCTCGGTCACCAACGATAGGCAACGGTGGTGCGGACCAGCCATATCTAATGGTT
GGAAAGCCTCACGGTTGGCCCTGTTGGGGTTGGGATGGAGCGGAGATGTGGCTATGGTGCCAGTCGAAGAACAGTGGCCA
CTGTCATATTGGGTGGCCGGTGGGAGTTCTAGTGAAGGGAGGTAGGATATACCCAGGAGGTGGGCTGCCCAGCAAAGAGC
TAGCAGGCATGATAGGTCCATATGCTAGCGGAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis