Browse Element(s) Details


OsAffx.3142.1.S1_at

Description tigr:9631.m00518
TID=OsAffx.3142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0595011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05880Os.16891.1.S1_at2/113+2928630..2931667FAD binding domain containing protein, expressed
LOC_Os03g05890OsAffx.12745.1.S1_at11/113+2934944..2935369hypothetical protein
LOC_Os03g05900Os.16891.1.S1_at11/113+2937423..2939509FAD binding domain containing protein, expressed
LOC_Os03g05910Os.8947.1.S1_at11/113+2940857..2943407FAD binding domain containing protein, expressed
LOC_Os03g05920Os.31992.1.S1_at11/113+2943827..2946397FAD binding domain containing protein, expressed
LOC_Os03g05930OsAffx.24986.1.S1_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05930OsAffx.24986.1.S1_s_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05940NANA3+2949649..2950047hypothetical protein
LOC_Os03g05950OsAffx.3142.1.S1_at11/113+2952426..2953513expressed protein
LOC_Os03g05960NANA3+2954334..2956051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein
LOC_Os03g05980Os.12189.1.S1_at10/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05980Os.12189.2.S1_x_at2/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05990Os.31992.1.S1_at5/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.3017.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.31754.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g06000Os.20535.1.S1_at11/113+2977966..2979110Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3142.1.S1_at--1051--811Chr03:2952929..2952953 (25 bp)
ATGGTTCGAGTTCATCCTGATTTGA
LOC_Os03g05950
OsAffx.3142.1.S1_at--245--631Chr03:2952993..2953017 (25 bp)
ATGCTGCATCTTCATCTTCTGATAA
LOC_Os03g05950
OsAffx.3142.1.S1_at--979--5251Chr03:2953058..2953082 (25 bp)
GAATCGTCTGATGACAGCGGCTCCT
LOC_Os03g05950
OsAffx.3142.1.S1_at--1052--9691Chr03:2953102..2953126 (25 bp)
TCACACTGCTCCTTTTGTGCAAGAA
LOC_Os03g05950
OsAffx.3142.1.S1_at--409--5531Chr03:2953124..2953148 (25 bp)
GAAAACTCGAGTCCTGCTTTGAAGC
LOC_Os03g05950
OsAffx.3142.1.S1_at--59--3671Chr03:2953161..2953185 (25 bp)
CTTCAAGTTCTCCTGTTGACTCGAA
LOC_Os03g05950
OsAffx.3142.1.S1_at--597--91Chr03:2953235..2953259 (25 bp)
ATTCTGTCTTATGAGCTACCTGCTA
LOC_Os03g05950
OsAffx.3142.1.S1_at--1103--2571Chr03:2953298..2953322 (25 bp)
AACGTTAATTCTCTTTCAGCTGCAG
LOC_Os03g05950
OsAffx.3142.1.S1_at--1118--8971Chr03:2953344..2953368 (25 bp)
TGAACGTTCTTACTTCTGCTGCCAA
LOC_Os03g05950
OsAffx.3142.1.S1_at--308--8891Chr03:2953375..2953399 (25 bp)
TGAGGAACCTATTTGCATTGATGCT
LOC_Os03g05950
OsAffx.3142.1.S1_at--438--8531Chr03:2953407..2953431 (25 bp)
TGGACATGAACCCTGTCAATCCTGT
LOC_Os03g05950
Target Sequence 
ATGGTTCGAGTTCATCCTGATTTGAAGAAGAAAAAGAAGAAAAACTCGAATATCAATCCAAAAGATGCTGCATCTTCATC
TTCTGATAATGAGGAGAATAGCTTGGATGGGGAGTCTGATTCAAGTGATGAATCGTCTGATGACAGCGGCTCCTCTGAGT
CGAGCGAACATACTCACACTGCTCCTTTTGTGCAAGAAAACTCGAGTCCTGCTTTGAAGCGTAAAAAGATGCCTTCAAGT
TCTCCTGTTGACTCGAACTTGAAAAAAGTTCGAATTGCTCTGGATAGTGATGATGAGGATGAAAACATTCTGTCTTATGA
GCTACCTGCTATCAGTGAGATAAGTTCAGTTGAGATTGGGAATGTTTCGAACGTTAATTCTCTTTCAGCTGCAGCTGATT
ACCTCTCTGCTCCCTTGAACGTTCTTACTTCTGCTGCCAAAGAGGTTGAGGAACCTATTTGCATTGATGCTATTGATGTG
GACATGAACCCTGTCAATCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis