Browse Element(s) Details

OsAffx.31467.3.S1_s_at

Description

tigr:9639.m04120
TID=OsAffx.31467.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine protein kinase
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g44430	11/11	Protein kinase domain containing protein, expressed
LOC_Os11g44260	1/11	Protein kinase domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g44400	Os.47463.1.S1_x_at	3/11	11	+	26345617..26355765	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400	Os.2987.3.S1_x_at	2/11	11	+	26345617..26355765	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400	Os.14491.2.S1_x_at	2/11	11	+	26345617..26355765	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400	Os.27639.1.S1_x_at	1/11	11	+	26345617..26355765	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400	OsAffx.30255.1.S1_at	1/11	11	+	26345617..26355765	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44400	Os.53731.1.S1_at	1/11	11	+	26345617..26355765	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44410	Os.35344.18.S1_x_at	8/11	11	+	26359168..26364908	transposon protein, putative, Mutator sub-class
LOC_Os11g44410	Os.35344.3.S1_x_at	6/11	11	+	26359168..26364908	transposon protein, putative, Mutator sub-class
LOC_Os11g44410	OsAffx.22940.5.S1_x_at	2/11	11	+	26359168..26364908	transposon protein, putative, Mutator sub-class
LOC_Os11g44420	Os.56139.1.S1_at	11/11	11	+	26368561..26369278	expressed protein
LOC_Os11g44430	OsAffx.31467.3.S1_at	11/11	11	+	26371133..26373240	Protein kinase domain containing protein, expressed
LOC_Os11g44430	OsAffx.31467.3.S1_s_at	11/11	11	+	26371133..26373240	Protein kinase domain containing protein, expressed
LOC_Os11g44440	Os.47463.1.S1_x_at	4/11	11	+	26374361..26386914	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44440	Os.14491.2.S1_x_at	2/11	11	+	26374361..26386914	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44440	Os.27037.1.A1_at	1/11	11	+	26374361..26386914	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44450	OsAffx.29789.3.S1_x_at	1/11	11	+	26389249..26390729	hypothetical protein
LOC_Os11g44460	NA	NA	11	+	26396523..26396867	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.31467.3.S1_s_at--325--251	1	Chr11:26371821..26371845 (25 bp)	AACATCCTCCTCGATGGCAACTGGG	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--225--85	2	Chr11:26244978..26245002 (25 bp)	ATGGCAACTGGGTGCCGCGCTTGAC	LOC_Os11g44260
OsAffx.31467.3.S1_s_at--423--571	1	Chr11:26371786..26371810 (25 bp)	GACGGACTTCGGGTTGGCGCTCACC	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--637--1077	1	Chr11:26371733..26371757 (25 bp)	TTGTTGGCACGTACGGATACGCGGC	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--1142--849	1	Chr11:26371729..26371753 (25 bp)	TGGCACGTACGGATACGCGGCACCG	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--956--413	1	Chr11:26371714..26371738 (25 bp)	CGCGGCACCGGAGTACGTTATGACA	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--567--177	1	Chr11:26371708..26371732 (25 bp)	ACCGGAGTACGTTATGACAGGCATT	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--492--895	1	Chr11:26371694..26371718 (25 bp)	TGACAGGCATTCTGAACCCGTCAGT	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--1155--1059	1	Chr11:26371685..26371709 (25 bp)	TTCTGAACCCGTCAGTCGATATCTA	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--1021--711	1	Chr11:26371675..26371699 (25 bp)	GTCAGTCGATATCTACGGTTTCGGT	LOC_Os11g44430
OsAffx.31467.3.S1_s_at--1161--141	1	Chr11:26371622..26371646 (25 bp)	AGAAACCACATTTCTTTGAAGAAGA	LOC_Os11g44430

Target Sequence

AACATCCTCCTCGATGGCAACTGGGTGCCGCGCTTGACGGACTTCGGGTTGGCGCTCACCTGGGAAGGCCCAGGCCATGA
GGATACGGTTGTTGGCACGTACGGATACGCGGCACCGGAGTACGTTATGACAGGCATTCTGAACCCGTCAGTCGATATCT
ACGGTTTCGGTGTTGTGATGCTTGAGTTATTGACGGGGAAGAAACCACATTTCTTTGAAGAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis