Browse Element(s) Details


OsAffx.31479.4.S1_x_at

Description tigr:9633.m04182
TID=OsAffx.31479.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g448309/11AT hook motif-containing protein, putative, expressed
LOC_Os11g383009/11AT hook motif-containing protein, putative
LOC_Os05g020909/11AT hook motif-containing protein, putative
LOC_Os05g447869/11AT hook motif-containing protein, putative
LOC_Os11g411908/11AT hook motif-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44780NANA11+26594524..26598066retrotransposon protein, putative, unclassified
LOC_Os11g44790OsAffx.31478.1.S1_at7/1111+26598839..26601742EAP30 family protein
LOC_Os11g44800Os.49151.1.S1_at11/1111+26605149..26606026expressed protein
LOC_Os11g44810Os.12735.1.S1_at11/1111+26609579..26611197auxin-repressed protein-like protein ARP1, putative, expressed
LOC_Os11g44810Os.12735.1.S1_s_at11/1111+26609579..26611197auxin-repressed protein-like protein ARP1, putative, expressed
LOC_Os11g44820OsAffx.7415.1.S1_at11/1111+26616130..26616969expressed protein
LOC_Os11g44830OsAffx.31479.1.S1_x_at11/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44830OsAffx.31479.4.S1_x_at9/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44840OsAffx.31479.5.S1_x_at9/1111+26629929..26634029hypothetical protein
LOC_Os11g44850OsAffx.31480.1.S1_at11/1111+26637773..26638612hypothetical protein
LOC_Os11g44860OsAffx.19376.1.S1_x_at11/1111+26642585..26646473Protein kinase domain containing protein, expressed
LOC_Os11g44870Os.35688.1.S1_at11/1111+26648502..26650903expressed protein
LOC_Os11g44880OsAffx.19377.1.S1_at11/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44880Os.57189.1.S1_at1/1111+26651962..26658489kinesin motor protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31479.4.S1_x_at--669--3834Chr05:603434..603458 (25 bp)
CTGCAGATTTCGCACAATGGATTTT
LOC_Os05g02090
OsAffx.31479.4.S1_x_at--563--5595Chr11:24195726..24195750 (25 bp)
GAAATACCTGATGACCTGATACTGA
LOC_Os11g41190
OsAffx.31479.4.S1_x_at--868--5495Chr11:24195834..24195858 (25 bp)
GAACAGCGAGCAATTCTATGCCCAA
LOC_Os11g41190
OsAffx.31479.4.S1_x_at--282--2095Chr11:24195921..24195945 (25 bp)
ACATATCTGAGCTGCGACACTGTAT
LOC_Os11g41190
OsAffx.31479.4.S1_x_at--663--5555Chr11:24195969..24195993 (25 bp)
GAAACCGATGTCCTATATCCAACAG
LOC_Os11g41190
OsAffx.31479.4.S1_x_at--15--3095Chr11:24196002..24196026 (25 bp)
AATAGTCTAAACTTCCCTGGAATGC
LOC_Os11g41190
OsAffx.31479.4.S1_x_at--533--3915Chr11:24196018..24196042 (25 bp)
CTGGAATGCCAAACCATGTGCTGAA
LOC_Os11g41190
OsAffx.31479.4.S1_x_at--741--5575Chr11:24196051..24196070 (20 bp)
GAAAGTAGGCCTTCCAGTGATGCTA
LOC_Os11g41190
OsAffx.31479.4.S1_x_at--552--5275Chr11:24196114..24196138 (25 bp)
GAATGACCATTACTCAGCTCGGGAA
LOC_Os11g41190
OsAffx.31479.4.S1_x_at--357--2791Chr05:25950835..25950858 (24 bp)
AAGAGTCATACAGACACCCTTCATG
NONE
OsAffx.31479.4.S1_x_at--570--1411Chr05:25950824..25950848 (25 bp)
AGACACCCTTCATGATGGCCCAAAA
NONE
Target Sequence 
CTGCAGATTTCGCACAATGGATTTTGAACATTGGTGATGGCAAAACAACATCAGCGGATGGAGAGGAATGGATAGAAATA
CCTGATGACCTGATACTGAAGAAAGGAGGTGATCCAAAGGAAGAAATTGTGAAGAGCATATATCCAAACTTGGTACAGAA
TTATAAGAAACGAGATTTCTTAGAACAGCGAGCAATTCTATGCCCAAGAAATGAGACAGCGAGGGAAATTAATGAATTTA
TAATGAACATGATAGAAGGAGAGGAGATAACATATCTGAGCTGCGACACTGTATGCAAAGCAACAACTAATGACAGTGAA
ACCGATGTCCTATATCCAACAGAATTTCTAAATAGTCTAAACTTCCCTGGAATGCCAAACCATGTGCTGAAACTGAAAGT
AGGCCTTCCAGTGATGCTACTGCGAAACATTAATCAAAGTTCAGGGTTATGTAATGGTACACGAATGACCATTACTCAGC
TCGGGAAAAGATTCATTGAAGCACAGATCATAACAGGAACACATGTAGGAGAAAAGAGTCATACAGACACCCTTCATGAT
GGCCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31479.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis