Browse Element(s) Details


OsAffx.31512.1.S1_x_at

Description tigr:9639.m04337
TID=OsAffx.31512.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1184010/11hypothetical protein
LOC_Os06g390901/11transposon protein, putative, unclassified
LOC_Os05g258001/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11820Os.14919.1.S1_at2/119+6610010..6615959SWIM zinc finger family protein
LOC_Os09g11820OsAffx.29313.1.S1_at1/119+6610010..6615959SWIM zinc finger family protein
LOC_Os09g11820Os.56216.1.S1_at1/119+6610010..6615959SWIM zinc finger family protein
LOC_Os09g11830OsAffx.19407.1.S1_at11/119+6630460..6632006hypothetical protein
LOC_Os09g11840OsAffx.31512.1.S1_x_at10/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.24317.5.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.27015.2.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11850OsAffx.24317.3.S1_at11/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11850OsAffx.24317.5.S1_x_at6/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11860OsAffx.17852.1.S1_at11/119+6646197..6648197hypothetical protein
LOC_Os09g11870OsAffx.24317.6.S1_x_at11/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870OsAffx.28002.1.A1_at10/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870Os.3920.1.S1_at2/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11880OsAffx.19405.1.S1_at9/119+6664743..6665826hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31512.1.S1_x_at--879--5732Chr09:6640116..6640140 (25 bp)
GACTGGCGACGGGAAGTGGTGACGA
LOC_Os09g11840
OsAffx.31512.1.S1_x_at--567--6132Chr09:13807412..13807436 (25 bp)
GAGGGCGATGAGGAAGGGCTTCGAC
NONE
OsAffx.31512.1.S1_x_at--507--10636Chr09:13807431..13807455 (25 bp)
TTCGACGGAGGGAAGCCGCCGATAT
NONE
OsAffx.31512.1.S1_x_at--209--6291Chr09:6639457..6639481 (25 bp)
GATGAGGACACAAGCACCAATCCGA
LOC_Os09g11840
OsAffx.31512.1.S1_x_at--100--6191Chr09:6639454..6639478 (25 bp)
GAGGACACAAGCACCAATCCGAATG
LOC_Os09g11840
OsAffx.31512.1.S1_x_at--504--2211Chr09:6639449..6639472 (24 bp)
ACAAGCACCAATCCGAATGGACAGA
LOC_Os09g11840
OsAffx.31512.1.S1_x_at--574--5071Chr09:6639449..6639468 (20 bp)
GCACCAATCCGAATGGACAGAACAA
LOC_Os09g11840
OsAffx.31512.1.S1_x_at--446--551NONE
ATCCGAATGGACAGAACAAGCAGGC
NONE
OsAffx.31512.1.S1_x_at--151--5291Chr09:6638945..6639458 (25 bp)
GAATGGACAGAACAAGCAGGCAATA
LOC_Os09g11840
OsAffx.31512.1.S1_x_at--641--5012Chr09:6638930..6638954 (25 bp)
GCAGGCAATAGGAATGGAAGGCAAT
LOC_Os09g11840
OsAffx.31512.1.S1_x_at--1049--8191Chr09:6638915..6638939 (25 bp)
GGAAGGCAATACTGGTGGCCGTATA
LOC_Os09g11840
Target Sequence 
GACTGGCGACGGGAAGTGGTGACGAGAGAAGGAGGGGAGGGCGATGAGGAAGGGCTTCGACGGAGGGAAGCCGCCGATAT
CAGGGGAGGCGGGGAGGCGGACGTCGACGGAGGGGCGCTGGCGGTGGAGAAGGCGGCGAGGAAGGGCGAGGGGGATGAGG
ACACAAGCACCAATCCGAATGGACAGAACAAGCAGGCAATAGGAATGGAAGGCAATACTGGTGGCCGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31512.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis