Browse Element(s) Details


OsAffx.31528.1.S1_x_at

Description tigr:9639.m02271
TID=OsAffx.31528.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2553011/11hypothetical protein
LOC_Os11g4775011/11hypothetical protein
LOC_Os10g360603/11Chorion family 2 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25510Os.56220.1.S1_at11/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.4190.1.S1_x_at2/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.26628.1.S1_x_at1/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25520Os.35344.18.S1_x_at9/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520Os.35344.3.S1_x_at8/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520OsAffx.22940.5.S1_x_at3/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25530OsAffx.31528.1.S1_x_at11/1111+14051002..14052284hypothetical protein
LOC_Os11g25530OsAffx.31528.1.S1_at9/1111+14051002..14052284hypothetical protein
LOC_Os11g25540NANA11+14054874..14055410hypothetical protein
LOC_Os11g25550OsAffx.31133.1.S1_at11/1111+14061558..14062619hypothetical protein
LOC_Os11g25560OsAffx.31130.1.S1_at10/1111+14068785..14071018expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31528.1.S1_x_at--30--6232Chr11:14051242..14051266 (25 bp)
GAGGCCGTCCTCATCGTAGCAAGGA
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--868--3992Chr11:14051247..14051271 (25 bp)
CGTCCTCATCGTAGCAAGGAGTGAC
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--88--3552Chr11:14051382..14051406 (25 bp)
CATCGAGGCACCGTTGAAGAGGAAG
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--403--2793Chr11:14051398..14051422 (25 bp)
AAGAGGAAGGAGACGGCCTCGCCGC
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--343--6612Chr11:14051980..14052004 (25 bp)
GATTGGTGACAAACAAACCTCCTGG
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--912--9272Chr11:14051999..14052023 (25 bp)
TCCTGGGATGAGGTTTACAGCGAGA
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--1133--3373Chr11:14052016..14052040 (25 bp)
CAGCGAGAAGAAACATGCGTGGGCC
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--688--393Chr11:14052046..14052070 (25 bp)
ATCACCTTCACAATTCCAACAGCTT
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--655--4373Chr11:14052061..14052085 (25 bp)
CCAACAGCTTTGATGCCATTTCGGT
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--73--592Chr11:14052073..14052097 (25 bp)
ATGCCATTTCGGTGTCAGGTTCAGA
LOC_Os11g25530
OsAffx.31528.1.S1_x_at--663--192Chr11:14052078..14052102 (25 bp)
ATTTCGGTGTCAGGTTCAGATGGGA
LOC_Os11g25530
Target Sequence 
GAGGCCGTCCTCATCGTAGCAAGGAGTGACNATAGCTCCCGTCNTCATCCTCCTTCCGCCGCCGCATTCGTCGNCTTCCC
CCACGGCGGCGCGCNNGCCCGGAGGGTGGTGCGGCCGGCGACGGCGGCTCCCGAGGAGGCCATCGAGGCACCGTTGAAGA
GGAAGGAGACGGCCTCGCCGCCACCGCCGCNNGATNGATTGGTGACAAACAAACCTCCTGGGATGAGGTTTACAGCGAGA
AGAAACATGCGTGGGCCTGNNNNNNNNTCGATCACCTTCACAATTCCAACAGCTTTGATGCCATTTCGGTGTCAGGTTCA
GATGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31528.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis